View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8221_low_2 (Length: 719)

Name: NF8221_low_2
Description: NF8221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8221_low_2
NF8221_low_2
[»] chr8 (3 HSPs)
chr8 (1-719)||(39087157-39087874)
chr8 (259-334)||(8361216-8361291)
chr8 (259-334)||(25091397-25091472)
[»] scaffold0229 (1 HSPs)
scaffold0229 (259-334)||(25493-25568)
[»] chr7 (3 HSPs)
chr7 (259-334)||(12976995-12977070)
chr7 (259-334)||(12982453-12982528)
chr7 (259-334)||(18293104-18293179)
[»] chr6 (3 HSPs)
chr6 (259-334)||(4849804-4849879)
chr6 (265-332)||(15873527-15873594)
chr6 (265-319)||(21057853-21057907)
[»] chr4 (2 HSPs)
chr4 (265-332)||(13915871-13915938)
chr4 (259-334)||(14249866-14249941)
[»] chr1 (1 HSPs)
chr1 (259-334)||(1365185-1365260)
[»] chr3 (2 HSPs)
chr3 (259-334)||(38357066-38357141)
chr3 (265-332)||(35684505-35684572)


Alignment Details
Target: chr8 (Bit Score: 695; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 695; E-Value: 0
Query Start/End: Original strand, 1 - 719
Target Start/End: Complemental strand, 39087874 - 39087157
Alignment:
Q  1 cagctttattagataatagaaaaaccgaagacacagaaaataaactgcttagtggtttaggcagtattaattctggagccgaagagaaggcgtcaaaaca 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39087874 cagctctattagataatagaaaaaccgaagacacagaaaataaactgcttagtggtttaggcagtattaattctggagccgaagagaaggcgtcgaaaca 39087775  T
Q  101 accagctaatccagatggtaaacaaagtgaagcagaagagaaggcagataaaccacaatcaacttcgggcagcataaaatctgaggcagcacaaaaggta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39087774 accagctaatccagatggtaaacaaagtgaagcagaagagaaggcagataaaccacaatcaacttcgggcagcataaaatctgaggcagcacaaaaggta 39087675  T
Q  201 gggaatcaatcgtccagttcaaagagcacacccatctcaaataagccagccaggaagcgcattacacctattgcaattgatccatgatttttcaatgcca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39087674 gggaatcaatcgtccagttcaaagagcacacccatctcaaataagccagccaggaagcgcattacacctattgcaattgatccatgatttt-caatgcca 39087576  T
Q  301 gagaagttccattaacgtccgcccgtgtacatcttttttgtgcggctaacatttccaaaacatcccccctcttgttgttccctgttttggtttacatatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39087575 gagaagttccattaacgtccgcccgtgtacatcttttttgtgcggctaacatttccaaaacatcccccctcttgttgttccctgttttggtttacatatt 39087476  T
Q  401 ctgtaatatagattacattataatatttatcatctttagagtaaacaatcttcattttgaagatttccttttggacctcttgttttagtcataggttgcc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39087475 ctgtaatatagattacattataatatttatcatctttagagtaaacaatcttcattttgaagatttccttttggacctcttgttttagtcataggtttcc 39087376  T
Q  501 tactttcctagttagccaactgtcgttgccttatattggcaagacagcacaaaatatcatttattcgtatattttatttatgttatgacttttgtgaggt 600  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39087375 tactttcctagttagccaactgtcattgccttatattggcaagacagcacaaaatatcatttattcgtatattttatttatgttatgacttttgtgaggt 39087276  T
Q  601 taagatgacacttgcttaatttaacaaggtttagcacatcttaataaacattacatattaaattcgtccatgcttttgttgagtaaagaacataaaattt 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39087275 taagatgacacttgcttaatttaacaaggtttagcacatcttaataaacattacatattaaattcgtccatgcttttgttgagtaaagaacataaaattt 39087176  T
Q  701 aattttcctagtgtttcat 719  Q
    |||||||||||||||||||    
T  39087175 aattttcctagtgtttcat 39087157  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 8361291 - 8361216
Alignment:
Q  259 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 334  Q
    ||||| ||||||||||||||| || || || ||||||||||| |||| ||||||||||||| ||  ||||||||||    
T  8361291 gcattgcacctattgcaattggtcaattatatttcaatgccatagaaattccattaacgtcagcttgtgtacatct 8361216  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 25091472 - 25091397
Alignment:
Q  259 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 334  Q
    ||||| ||||||||||||||| || || || ||||||||||| |||| ||||||||||||| ||  ||||||||||    
T  25091472 gcattgcacctattgcaattggtcaattatatttcaatgccatagaaattccattaacgtcagcttgtgtacatct 25091397  T

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Target: scaffold0229 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 259 - 334
Target Start/End: Original strand, 25493 - 25568
Alignment:
Q  259 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 334  Q
    ||||| ||||||||||||||| || ||||| ||||||||| |||||| || |||||||||| ||| ||||||||||    
T  25493 gcattgcacctattgcaattggtcaatgatatttcaatgcaagagaaatttcattaacgtcagcctgtgtacatct 25568  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 259 - 334
Target Start/End: Original strand, 12976995 - 12977070
Alignment:
Q  259 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 334  Q
    ||||| ||||||||||||||| || ||||| ||||||||||| |||| ||||| ||||||| ||| ||||||||||    
T  12976995 gcattgcacctattgcaattggtcaatgatatttcaatgccatagaaattccactaacgtcagcctgtgtacatct 12977070  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 259 - 334
Target Start/End: Original strand, 12982453 - 12982528
Alignment:
Q  259 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 334  Q
    ||||| ||||||||||||||| || ||||| ||||||||||| |||| ||||| ||||||| ||| ||||||||||    
T  12982453 gcattgcacctattgcaattggtcaatgatatttcaatgccatagaaattccactaacgtcagcctgtgtacatct 12982528  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 18293179 - 18293104
Alignment:
Q  259 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 334  Q
    ||||| |||| |||||||||| || ||||| ||||||||||| |||| ||||| |||||||  || ||||||||||    
T  18293179 gcattgcacccattgcaattggtcaatgatatttcaatgccatagaaattccactaacgtcatcctgtgtacatct 18293104  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 259 - 334
Target Start/End: Original strand, 4849804 - 4849879
Alignment:
Q  259 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 334  Q
    ||||| ||||||||||||||| || ||||| ||||||||||| |||| ||||| ||||||| ||| ||||||||||    
T  4849804 gcattgcacctattgcaattggtcaatgatatttcaatgccatagaaattccactaacgtcagcctgtgtacatct 4849879  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 265 - 332
Target Start/End: Original strand, 15873527 - 15873594
Alignment:
Q  265 cacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacat 332  Q
    ||||||||||||||| || ||||| ||||||||||| | || ||||||||||||| ||| ||||||||    
T  15873527 cacctattgcaattggtcaatgatatttcaatgccataaaaattccattaacgtcagcctgtgtacat 15873594  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 265 - 319
Target Start/End: Complemental strand, 21057907 - 21057853
Alignment:
Q  265 cacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtc 319  Q
    ||||||||||||||| || ||||| ||||||||||| |||| |||||||||||||    
T  21057907 cacctattgcaattggtcaatgatatttcaatgccatagaaattccattaacgtc 21057853  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 265 - 332
Target Start/End: Original strand, 13915871 - 13915938
Alignment:
Q  265 cacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacat 332  Q
    ||||||||||||||| || ||||| ||||||||||| |||| ||||||||||||| ||| ||||||||    
T  13915871 cacctattgcaattggtcaatgatatttcaatgccatagaaattccattaacgtcagcctgtgtacat 13915938  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 259 - 334
Target Start/End: Original strand, 14249866 - 14249941
Alignment:
Q  259 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 334  Q
    ||||| ||||||||||||||| || || || ||||||||||| |||| ||||||||||||| ||  ||||||||||    
T  14249866 gcattgcacctattgcaattggtcaattatatttcaatgccatagaaattccattaacgtcagcttgtgtacatct 14249941  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 1365260 - 1365185
Alignment:
Q  259 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 334  Q
    ||||| ||||||||||||||| || ||||| ||||||||| |||||| || |||||||||| ||| ||||||||||    
T  1365260 gcattgcacctattgcaattggtcaatgatatttcaatgcaagagaaatttcattaacgtcagcctgtgtacatct 1365185  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 38357141 - 38357066
Alignment:
Q  259 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 334  Q
    ||||| ||||||||||||||| || || || ||||||||||| |||| ||||||||||||| ||  ||||||||||    
T  38357141 gcattgcacctattgcaattggtcaattatatttcaatgccatagaaattccattaacgtcagcttgtgtacatct 38357066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 332
Target Start/End: Original strand, 35684505 - 35684572
Alignment:
Q  265 cacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacat 332  Q
    ||||||||||||||| || ||||| ||||||| ||| |||| ||||||||||||| ||  ||||||||    
T  35684505 cacctattgcaattggtcaatgatatttcaataccatagaaattccattaacgtcagcatgtgtacat 35684572  T

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