View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8221_low_5 (Length: 497)
Name: NF8221_low_5
Description: NF8221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8221_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 109 - 368
Target Start/End: Original strand, 53763435 - 53763694
Alignment:
| Q |
109 |
ctggtggagaatttcccaaccaatgtatgatgcaggtaaaccagccttttcaagtgtcaactcaattgactgtggctcatttcttattgcaaatttgaac |
208 |
Q |
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| T |
53763435 |
ctggtggagaatttcccaaccaatgtatgatgcaggtaaaccagccttttcaagtgtcaactcaattgactgtggctcatttcttattgcaaatttgaac |
53763534 |
T |
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| Q |
209 |
acttctttatcattcatatgagttgaaaacactactatttgagtcttgtgcattattagccccctcttcttttcatgcagcattcaaatgccgacatgaa |
308 |
Q |
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| T |
53763535 |
acttctttatcattcatatgagttgaaaacactactatttgagtcttgtgcattattagccccctcttcttttcatgcagcattcaaatgccaacatgaa |
53763634 |
T |
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| Q |
309 |
attaaaataaatgatcaatcacataatacttaacattttgcacgtgtctgtgtgtaagga |
368 |
Q |
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| T |
53763635 |
attaaaataaatgatcaatcacataatacttaacattttgcacgtgtctgtgtgtaagga |
53763694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 367 - 465
Target Start/End: Original strand, 53763883 - 53763978
Alignment:
| Q |
367 |
gagtactatatacctatatctataactaatcaaatcagaagtaactaaaccatcttcctcacagttgcaagcctgaaatataatcataattaattatgg |
465 |
Q |
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| T |
53763883 |
gagtactatatacctat---tataactaatcaaatcagaagtaactaaaccatcttcctcacagttgcaagcctgaaatataatcataattaattatgg |
53763978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 427
Target Start/End: Original strand, 10655482 - 10655647
Alignment:
| Q |
262 |
tattagccccctcttcttttcatgcagcattcaaatgccgacatgaaattaaaataaatgatcaatcacataatacttaacattttgcacgtgtctgtgt |
361 |
Q |
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| T |
10655482 |
tattagccccttcttcttttcatgcagcatttaaatgcctacgtgaaattatagtaaatgattattcactcaacaattaacattctgctggtgtttgtgt |
10655581 |
T |
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| Q |
362 |
gtaaggagtactatatacctatatctataactaatcaaatcagaagtaactaaaccatcttcctca |
427 |
Q |
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| T |
10655582 |
atagggagtactacctactcatatctatgacttttcaaatcaaaactaaataaacaatcttcctca |
10655647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 427
Target Start/End: Original strand, 10869627 - 10869792
Alignment:
| Q |
262 |
tattagccccctcttcttttcatgcagcattcaaatgccgacatgaaattaaaataaatgatcaatcacataatacttaacattttgcacgtgtctgtgt |
361 |
Q |
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| T |
10869627 |
tattagccccttcttcttttcatgcagcatttaaatgcctacgtgaaattatagtaaatgattattcactcaacaattaacattctgctggtgtttgtgt |
10869726 |
T |
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| Q |
362 |
gtaaggagtactatatacctatatctataactaatcaaatcagaagtaactaaaccatcttcctca |
427 |
Q |
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| T |
10869727 |
atagggagtactacctactcatatctatgacttttcaaatcaaaactaaataaacaatcttcctca |
10869792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 982660 - 982721
Alignment:
| Q |
247 |
ttgagtcttgtgcattattagccccctcttcttttcatgcagcattcaaatgccgacatgaa |
308 |
Q |
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| T |
982660 |
ttgagtctggtgcattattagtcccttcttctttatatgctgcattcagatgcctacatgaa |
982721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 53763340 - 53763369
Alignment:
| Q |
14 |
taatactaactctgagtgattactgcttcc |
43 |
Q |
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| T |
53763340 |
taatactaactctgagtgattactgcttcc |
53763369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 249 - 351
Target Start/End: Complemental strand, 6434897 - 6434795
Alignment:
| Q |
249 |
gagtcttgtgcattattagccccctcttcttttcatgcagcattcaaatgccgacatgaaattaaaataaatgatcaatcacataatacttaacattttg |
348 |
Q |
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|||| ||||||||| ||| ||| ||||||||||||||| |||||||||| | ||||||||| |||||| ||||| |||||||||| |||||||||| || |
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| T |
6434897 |
gagtgttgtgcattgttacccctttcttcttttcatgcaccattcaaatgactacatgaaatgaaaatatatgattaatcacataacacttaacattctg |
6434798 |
T |
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| Q |
349 |
cac |
351 |
Q |
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||| |
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| T |
6434797 |
cac |
6434795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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