View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8221_low_8 (Length: 367)
Name: NF8221_low_8
Description: NF8221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8221_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 7206395 - 7206059
Alignment:
| Q |
13 |
agatagtgcaaacataatgcaacacaaatgaccaatttaagtagcaaaagactggtcctttgaggattcactccaacaaagtgagaaattagtttataat |
112 |
Q |
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| T |
7206395 |
agatagtgcaaacataatacaacacaaatgaccaatttaagtagcaaaagactggtcctttgaggattcactccaacaaagtgagaaattagtttataat |
7206296 |
T |
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| Q |
113 |
agcaaaaatgagtttgtatcaaaattgataaaaagtctaagcttagtattctaactctcataaagtggataatacaattcaatcgtatatcaatttaagt |
212 |
Q |
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| T |
7206295 |
agcaaaaatgagtttgtatcaaaattgataaaaagtctaagcttagtattctaactctcataaagtggacaa-acaattcaatcgtatatcaatttaagt |
7206197 |
T |
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| Q |
213 |
gtacaatgacaacttctaataactcccggcatagaggatttgaaataacgcttaattgataagtttgtgttttttcttgaatatttcattgttgatgata |
312 |
Q |
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| T |
7206196 |
gtaaaatgacaacttctaataactcccggcatagaggatttgaaataacgcttaattgataagtttgtgttttttcttgaatatttcattgttgatgat- |
7206098 |
T |
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| Q |
313 |
aacttgccttgttctacattttcatattatcgttcgctg |
351 |
Q |
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| T |
7206097 |
aacttgccttgttctacattttcatattatcgttcgctg |
7206059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 47744349 - 47744395
Alignment:
| Q |
120 |
atgagtttgtatcaaaattgataaaaagtctaagcttagtattctaa |
166 |
Q |
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| T |
47744349 |
atgagtttgtatctaaattgatacgaagtctaagcttaggattctaa |
47744395 |
T |
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