View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8222_high_1 (Length: 426)
Name: NF8222_high_1
Description: NF8222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8222_high_1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 31642278 - 31641853
Alignment:
| Q |
1 |
gagaagggttgaaagctagactttttaggttaatttggtatagaggttaattcaaatttttattactacttaacaaatttaatgtaattgcaaacttgcc |
100 |
Q |
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| T |
31642278 |
gagaagggttgaaagctagactttttaggttaatttggtatagaggttaattcaaaattttattactacttaacaaatttaatgtaattgcaaacttgcc |
31642179 |
T |
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| Q |
101 |
atgacaacataaatgaatggcatcccctcaataaaaacacaaatgacatgttggttcatgaagtccactattgaatcaagaccatattagtggccctttt |
200 |
Q |
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| T |
31642178 |
atgacaacacaaatgaatggcatcccctcaataaaaacacaaatgacatgttggttcatgaagtccactattgaatcaagaccatattagtggccctttt |
31642079 |
T |
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| Q |
201 |
ttataaatgaataatacaatggttataagtattatatgcaagaaaatatatagtattttctgatgctcttttgtgaattaatataaattttcttttgttt |
300 |
Q |
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| T |
31642078 |
ttataaatgaataatacaatggttataagtattatatgcaagaaaatatatagtattttctcatgctcttttgtgaattaatataaattttcttttgttt |
31641979 |
T |
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| Q |
301 |
taatttgtgtgaaaactgcaggaaggatagcttcataactcatagagcattttgtgatgcattggctgaagaaagtgcaagaatgtctgcaaaccaatta |
400 |
Q |
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| T |
31641978 |
taatttgtgtgaaaactgcaggaaggatagcttcataactcatagagcattttgtgatgcattggctgaagaaagtgcaagaatgtctgcaaaccaatta |
31641879 |
T |
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| Q |
401 |
gccatcaccaccacaaacacaaaccc |
426 |
Q |
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| T |
31641878 |
gccatcaccaccacaaacacaaaccc |
31641853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 28495878 - 28495819
Alignment:
| Q |
323 |
aaggatagcttcataactcatagagcattttgtgatgcattggctgaagaaagtgcaaga |
382 |
Q |
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| T |
28495878 |
aaggatagtttcattacacatagagccttttgtgatgcattggcagaagagagtgcaaga |
28495819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 380
Target Start/End: Complemental strand, 22085007 - 22084946
Alignment:
| Q |
319 |
caggaaggatagcttcataactcatagagcattttgtgatgcattggctgaagaaagtgcaa |
380 |
Q |
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| T |
22085007 |
caggaaggacagcttcataacacatagagctttttgtgatgcattaactgaacaaagtgcaa |
22084946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 5788047 - 5787997
Alignment:
| Q |
332 |
ttcataactcatagagcattttgtgatgcattggctgaagaaagtgcaaga |
382 |
Q |
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| T |
5788047 |
ttcataacacatagagcattttgtgatgcattagcagaagagagtgcaaga |
5787997 |
T |
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