View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8222_high_10 (Length: 287)
Name: NF8222_high_10
Description: NF8222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8222_high_10 |
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| [»] chr1 (5 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 129 - 287
Target Start/End: Original strand, 19073843 - 19074001
Alignment:
| Q |
129 |
attgtgttatcatctgattgataagcttcttaattctaattgattcgcatgtagttttattatgacaataacaatcgcagtttaaggccgacgaatatcg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||| |||||||| |
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| T |
19073843 |
attgtgttatcatctgattgataagcttcttaattctaattgattcacatgtagttttattatgacaataacaattgcagcttaaggccgaagaatatcg |
19073942 |
T |
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| Q |
229 |
acttagttcgactttaactcatgtgttttgaaatcttagtttaattactagttagagat |
287 |
Q |
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||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
19073943 |
acttaattcgacttcaactcttgtgttttgaaatcttagcttaattactagttagagat |
19074001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 129 - 287
Target Start/End: Original strand, 19121733 - 19121891
Alignment:
| Q |
129 |
attgtgttatcatctgattgataagcttcttaattctaattgattcgcatgtagttttattatgacaataacaatcgcagtttaaggccgacgaatatcg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||| |||||||| |
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| T |
19121733 |
attgtgttatcatctgattgataagcttcttaattctaattgattcacatgtagttttattatgacaataacaattgcagcttaaggccgaagaatatcg |
19121832 |
T |
|
| Q |
229 |
acttagttcgactttaactcatgtgttttgaaatcttagtttaattactagttagagat |
287 |
Q |
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||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
19121833 |
acttaattcgacttcaactcttgtgttttgaaatcttagcttaattactagttagagat |
19121891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 19073697 - 19073752
Alignment:
| Q |
48 |
attattctatcccaaccatatctcatccccttaattctcacgaagctccaattatt |
103 |
Q |
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|||| |||| ||||||| ||||| | |||||||||||||||||||||| ||||||| |
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| T |
19073697 |
attactctaacccaaccctatcttacccccttaattctcacgaagctcaaattatt |
19073752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 19121587 - 19121642
Alignment:
| Q |
48 |
attattctatcccaaccatatctcatccccttaattctcacgaagctccaattatt |
103 |
Q |
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|||| |||| ||||||| ||||| | |||||||||||||||||||||| ||||||| |
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| T |
19121587 |
attactctaacccaaccctatcttacccccttaattctcacgaagctcaaattatt |
19121642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 51796115 - 51796080
Alignment:
| Q |
66 |
tatctcatccccttaattctcacgaagctccaatta |
101 |
Q |
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||||||||||| |||||||||||||||||||||||| |
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| T |
51796115 |
tatctcatccctttaattctcacgaagctccaatta |
51796080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 129 - 287
Target Start/End: Complemental strand, 128113 - 127955
Alignment:
| Q |
129 |
attgtgttatcatctgattgataagcttcttaattctaattgattcgcatgtagttttattatgacaataacaatcgcagtttaaggccgacgaatatcg |
228 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| |||||||||| ||||||| |
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| T |
128113 |
attgtgttatcatctgattgataagcttcttaattctaattgattcacttgtagttttattatgacaataacaattgcagcttaaggccgaagaatatca |
128014 |
T |
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| Q |
229 |
acttagttcgactttaactcatgtgttttgaaatcttagtttaattactagttagagat |
287 |
Q |
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||||| |||||||| ||||| |||||||||||||| ||| ||||||||||||||||||| |
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| T |
128013 |
acttaattcgacttcaactcttgtgttttgaaatcatagcttaattactagttagagat |
127955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 21800535 - 21800468
Alignment:
| Q |
129 |
attgtgttatcatctgattgataagcttcttaattctaattgattcgcatgtagttttattatgacaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
21800535 |
attgtgttatcatctgattgataagcttcttaattctagttgattcacatgtagttttattatgacaa |
21800468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 21796009 - 21795918
Alignment:
| Q |
196 |
ataacaatcgcagtttaaggccgacgaatatcgacttagttcgactttaactcatgtgttttgaaatcttagtttaattactagttagagat |
287 |
Q |
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|||||||| |||| |||| | || ||||||||||||| ||| |||| ||||| |||||||||||||| || ||||||||||||||||||| |
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| T |
21796009 |
ataacaattgcagcttaacgttgaagaatatcgacttaattccacttcaactcttgtgttttgaaatcataacttaattactagttagagat |
21795918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 21800681 - 21800626
Alignment:
| Q |
48 |
attattctatcccaaccatatctcatccccttaattctcacgaagctccaattatt |
103 |
Q |
| |
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|||| |||| ||||||| ||||| | |||||||||||||||||||||| ||||||| |
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| T |
21800681 |
attactctagcccaaccctatcttacccccttaattctcacgaagctcaaattatt |
21800626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 287
Target Start/End: Complemental strand, 21517284 - 21517177
Alignment:
| Q |
182 |
gttttattatgacaataacaatcgcagtttaaggccgacgaatatc--gacttagttcgactttaactcatgtgttttgaaatcttagtttaattactag |
279 |
Q |
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||||| |||||||||||||||| |||| |||||||| | |||||| |||||| |||||||| ||||| ||||||||||||||||| ||||||| ||| |
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| T |
21517284 |
gtttttttatgacaataacaattgcagcttaaggccaaagaatatattgacttaattcgacttcaactcttgtgttttgaaatcttaacttaattagtag |
21517185 |
T |
|
| Q |
280 |
ttagagat |
287 |
Q |
| |
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|||||||| |
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|
| T |
21517184 |
ttagagat |
21517177 |
T |
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