View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8222_high_14 (Length: 247)
Name: NF8222_high_14
Description: NF8222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8222_high_14 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 152 - 247
Target Start/End: Original strand, 33593768 - 33593863
Alignment:
| Q |
152 |
acaaatgcaccccctccaaagaaagttcttcttcccatcggtttcggcaccgaggcaatggaagcagttatcttaatccacgtcctccgtcgtgct |
247 |
Q |
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| T |
33593768 |
acaaatgcaccccctccaaagaaagttcttcttcccatcggtttcggcaccgaggaaatggaagcagttatcttaatccacgtcctccgtcgtgct |
33593863 |
T |
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Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 33593619 - 33593695
Alignment:
| Q |
12 |
ttctgcctcaaccttccaccgccacaagactctctccattcaccatctccacgtccactatctcccttaaaccctta |
88 |
Q |
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| T |
33593619 |
ttctgcctcaaccttccaccgccacaagactctctccattcaccatctccacgtccactatctcccttaaaccctta |
33593695 |
T |
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