View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8222_high_15 (Length: 240)
Name: NF8222_high_15
Description: NF8222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8222_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 24208550 - 24208774
Alignment:
| Q |
1 |
ccattcgtgcattaaccaaaaaacaagactgggaaaccgctgaaaatctccttcgtaaaatcatcttagcttcggattccgaaccacaattaaattatga |
100 |
Q |
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| T |
24208550 |
ccattcgtgcattaaccaaaaaacaagactgggaaaccgctgaaaatctccttcgtaaaatcatcttagcttcggattccgaaccacaattaacttatca |
24208649 |
T |
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| Q |
101 |
aattttcaacacactcatctacgcttgttcaaaacgcgggttagtagaactagcttctaaatggtttcgtatgatgttagattgtaacgttaccccgaat |
200 |
Q |
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| T |
24208650 |
aattttcaacacactcatttacgcttcttcaaaacgcgggttagtaaaattaacttctaaatggtttcgtatgatgttagattgtaacgttaccccgaat |
24208749 |
T |
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| Q |
201 |
gtcgcgacgttcgggatgttaatga |
225 |
Q |
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| T |
24208750 |
gtggcgacgttcgggatgttaatga |
24208774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 16841823 - 16841988
Alignment:
| Q |
1 |
ccattcgtgcattaaccaaaaaacaagactgggaaacc-gctgaaaatctccttcgtaaaatcatcttagcttcggattc---cgaaccacaattaaatt |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| || |
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| T |
16841823 |
ccattcgtgcattaaccaaaaaacaagactgggaaacctgctgaaaatctcctttgtaaaatcatcttagcttcggattcatacgaaccacaattaactt |
16841922 |
T |
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| Q |
97 |
atgaaattttcaacacactcatctacgcttgttcaaaacgcgggttagtagaactagcttctaaat |
162 |
Q |
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| T |
16841923 |
accaaattttcagcacactcatctacgcttgttcaaaacgcgggttagtaaaactggcttctaaat |
16841988 |
T |
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