View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8222_high_7 (Length: 351)
Name: NF8222_high_7
Description: NF8222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8222_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 19040212 - 19040018
Alignment:
| Q |
2 |
tctgtgtcagtgcttcatagtaacgatagaaataaaaacgagtatgcaaggaagaacttacagattgaataagcttagcagccttagaaatagtcccaan |
101 |
Q |
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| T |
19040212 |
tctgtgtcagtgcttcatagtaaccatagaaataaatacgagtatgcaaggaagaacttacagattgaacaagcttagcagccttagaaatagtcccaat |
19040113 |
T |
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| Q |
102 |
nnnnnnattagtcttccaaacacgaggatatcttggtcttggaccttttgcagcagcacataccttataataaaataataaaaataattcagatt |
196 |
Q |
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| T |
19040112 |
ttttttattagttttccaaacacgaggatatcttggtcttggaccttttgcagcagcaaataccttataataaaataataaaattaattcagatt |
19040018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 41 - 196
Target Start/End: Complemental strand, 18803175 - 18803022
Alignment:
| Q |
41 |
gagtatgcaaggaagaacttacagattgaataagcttagcagccttagaaatagtcccaannnnnnnattagtcttccaaacacgaggatatcttggtct |
140 |
Q |
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| T |
18803175 |
gagtatgcaaggaagaacttacagattgaacaagcttagcagctttagaaatggtcccaatttttttattagtcttccaaactcttggatata--ggtct |
18803078 |
T |
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| Q |
141 |
tggaccttttgcagcagcacataccttataataaaataataaaaataattcagatt |
196 |
Q |
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| T |
18803077 |
tggaccttttgcagcagcacataccttataacaaaataataaaaataattcagatt |
18803022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 219 - 327
Target Start/End: Complemental strand, 18802988 - 18802878
Alignment:
| Q |
219 |
ctatagaactaagg--aaaagaatcttaccacaatgtttcgtttatttgatatgttcatttgttggtatggtttagcaatgagtaggggcgaattagtga |
316 |
Q |
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| T |
18802988 |
ctatagaactaaaggaaaaagaatcttaccacaatgctacgtttatttgatatgttaatttgttggtatggtttagcaataagtagaggcgaattagaga |
18802889 |
T |
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| Q |
317 |
gttaaagcatt |
327 |
Q |
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| T |
18802888 |
gtgaaagcatt |
18802878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 19039970 - 19039875
Alignment:
| Q |
242 |
ttaccacaatgtttcgtttatttgatatgttcatttgttggtatggtttagcaatgagtaggggcgaattagtgagttaaagcattactgcgtgtg |
337 |
Q |
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| T |
19039970 |
ttaccacaatgcttcgtttatttgatatgttaatttgttggtatgatttagcaataagtagaggcgaattagtgagtgaaagcattactgcttgtg |
19039875 |
T |
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