View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8222_high_9 (Length: 318)
Name: NF8222_high_9
Description: NF8222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8222_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 19371348 - 19371059
Alignment:
| Q |
18 |
aataagcgatctcccagactcagttcttcatcacattctttcttttcttactatcaaagacacctgcatcacaagcctcctctcaaaaagatggaaactg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19371348 |
aataagcgatctcccagactcagttcttcatcacattctttcttttcttactatcaaagacacatgcatcacaagcctcctctcaaaaagatggaaactg |
19371249 |
T |
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| Q |
118 |
atttcgctgttacaacacatcttctacttggatgaaaaacactctcgagactctctacccttcatcgccgctcaagataagaatctacccttcctattag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19371248 |
atttcgctgttacaacacatcttctacttggatgaaaaacactctcgagactctctacccttcatcgccgctcgagataagaatctacccttcctattag |
19371149 |
T |
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| Q |
218 |
tccaccttaaatggtgccccaataatgaaattgtttatgccgctattcaacgacgactttataacccaaccatccatccctctctctctg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19371148 |
tccaccttaaatggtgccccaataatgaaattgtttatgccgctattcaacgacgactttataacccaaccatccatccctctcactctg |
19371059 |
T |
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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 50100718 - 50100773
Alignment:
| Q |
18 |
aataagcgatctcccagactcagttcttcatcacattctttcttttcttactatca |
73 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
50100718 |
aataaacgatctcccatactcagttcttcatcacattctttcttttcttactatca |
50100773 |
T |
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