View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8222_low_1 (Length: 659)

Name: NF8222_low_1
Description: NF8222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8222_low_1
NF8222_low_1
[»] chr6 (9 HSPs)
chr6 (279-659)||(32683421-32683800)
chr6 (407-659)||(32685131-32685382)
chr6 (1-185)||(32683895-32684079)
chr6 (424-589)||(33010662-33010825)
chr6 (321-435)||(32685388-32685505)
chr6 (599-659)||(33010870-33010930)
chr6 (409-520)||(34925139-34925256)
chr6 (596-650)||(33011205-33011259)
chr6 (596-648)||(28734759-28734811)
[»] scaffold1113 (1 HSPs)
scaffold1113 (494-559)||(1336-1403)
[»] scaffold0961 (1 HSPs)
scaffold0961 (494-559)||(2214-2281)


Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 279 - 659
Target Start/End: Complemental strand, 32683800 - 32683421
Alignment:
Q  279 ccaataaggatgattcaatatattgggactattacttttcccccgaaccatgcaatttataatataagagattgatggctataattctggagaatgagtc 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32683800 ccaataaggatgattcaatatattgggactattacttttcccccgaaccacgcaatttataatataagagattgatggctataattctggagaatgagtc 32683701  T
Q  379 aaaaccataatattaccgacacattgcgatagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttggcacttcccaa 478  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32683700 aaaaccataatattaccgacacattacgatagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttggcacttcccaa 32683601  T
Q  479 gtgtctaacactcacaacttaaggataaaacaaaacatagttcagttttcctttcttactctacacaactgcctaattttatttacagccttcaacatcc 578  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32683600 gtgtctaaaactcacaacttaaggataaaacagaacatagttcagttttcctttcttactctacacaactgcctaattttatttacagccttcaacatcc 32683501  T
Q  579 tttatttgaacttcggcttttggatttctttcatcttaagcttcattctccagctggtttggaacttcagctgccttagat 659  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  32683500 tttatttgaacttcggcttttgga-atctttcatcttaagcttcattctcctgctggtttggaacttgagctgccttagat 32683421  T

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Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 407 - 659
Target Start/End: Complemental strand, 32685382 - 32685131
Alignment:
Q  407 atagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttggcacttcccaagtgtctaacactcacaacttaaggataa 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32685382 atagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttggcacttcccaagtgtctaaaactcacaacttaaggataa 32685283  T
Q  507 aacaaaacatagttcagttttcctttcttactctacacaactgcctaattttatttacagccttcaacatcctttatttgaacttcggcttttggatttc 606  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  32685282 aacagaacatagttcagttttcctttcttactatacacaactgcctaattttatttacagccttcaacatcctttatttgaacttcggcttttgga-atc 32685184  T
Q  607 tttcatcttaagcttcattctccagctggtttggaacttcagctgccttagat 659  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  32685183 tttcatcttaagcttcattctcctgctggtttggaacttgagctgccttagat 32685131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 32684079 - 32683895
Alignment:
Q  1 gattcattcatgttatcacaggttcctaacttgcaaccaagacctttgcacttgcacattgtaaactacgtacaatagaaacaacctaagtgttttaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||    
T  32684079 gattcattcatgttatcacaggttcctaacttgcaaccaagacctttgcacttgcacattgtaaactgcgtacaatagaaataacccaagtgttttaatc 32683980  T
Q  101 tatggtagtcttatcacagtatgtgtttttggtcctatatacattgatgattgatcttcatccaagaattagcaagcaatgaccg 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32683979 tatggtagtcttatcacagtatgtgtttttggtcctatatacattgatgattgatcttcatccaagaattagcaagcaatgaccg 32683895  T

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Target: chr6; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 424 - 589
Target Start/End: Original strand, 33010662 - 33010825
Alignment:
Q  424 agtacataataaccagacacgcatagac-aagatttgcgagcttggcacttcccaagtgtctaacactcacaacttaaggataaaacaaaacatagttca 522  Q
    ||||||||||||||| |||||||||||| ||||||||| |||||||| |||||||||| |||| |  ||||||||| ||||||||||  |||||||||||    
T  33010662 agtacataataaccaaacacgcatagaccaagatttgcaagcttggctcttcccaagtatctatc--tcacaacttgaggataaaacggaacatagttca 33010759  T
Q  523 gttttcctttcttactctacacaactgcctaattttatttacagccttcaacatcctttatttgaac 589  Q
     ||| | |||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||    
T  33010760 atttccttttcttactccacacaactgcttaattttatttaca-ccttcaacatcctttatttgaac 33010825  T

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Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 321 - 435
Target Start/End: Complemental strand, 32685505 - 32685388
Alignment:
Q  321 ccgaaccatgcaatttataatataagagattgatggctataattctggagaatgagtcaaaaccataatattaccgacacattgcg---atagttatata 417  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| |||||||| |||||||  ||   |||||||||||    
T  32685505 ccgaaccacgcaatttataatataagaaattgatggctataattctggagaatgattcaaagccagaatattacagacacatcacgataatagttatata 32685406  T
Q  418 ggaatcagtacataataa 435  Q
    ||||| |||||| |||||    
T  32685405 ggaattagtacagaataa 32685388  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 599 - 659
Target Start/End: Original strand, 33010870 - 33010930
Alignment:
Q  599 tggatttctttcatcttaagcttcattctccagctggtttggaacttcagctgccttagat 659  Q
    ||||| |||||||||||||||||| | |||| |||||||||||||||||||||||||||||    
T  33010870 tggatgtctttcatcttaagcttcgtactcctgctggtttggaacttcagctgccttagat 33010930  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 409 - 520
Target Start/End: Original strand, 34925139 - 34925256
Alignment:
Q  409 agttatataggaatcagtacataataaccagacacgcatagac-aagatttgcgagcttgg----cact-tcccaagtgtctaacactcacaacttaagg 502  Q
    |||||||||||||  |||||| |||||| |||||| ||||||| |||||||| ||||||||    |||  |||||||||||||||||||||||||| | |    
T  34925139 agttatataggaaatagtacagaataacaagacacacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatg 34925238  T
Q  503 ataaaacaaaacatagtt 520  Q
    ||||||| ||||||||||    
T  34925239 ataaaactaaacatagtt 34925256  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 596 - 650
Target Start/End: Complemental strand, 33011259 - 33011205
Alignment:
Q  596 ttttggatttctttcatcttaagcttcattctccagctggtttggaacttcagct 650  Q
    ||||||||||||||| |||||| |||| |||||| ||||||||||||||||||||    
T  33011259 ttttggatttctttcttcttaatcttcgttctcctgctggtttggaacttcagct 33011205  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 596 - 648
Target Start/End: Complemental strand, 28734811 - 28734759
Alignment:
Q  596 ttttggatttctttcatcttaagcttcattctccagctggtttggaacttcag 648  Q
    |||||||| | ||||||| ||||||||| ||| | ||||||||||||||||||    
T  28734811 ttttggatgtttttcatcataagcttcaatcttctgctggtttggaacttcag 28734759  T

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Target: scaffold1113 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1113
Description:

Target: scaffold1113; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 559
Target Start/End: Original strand, 1336 - 1403
Alignment:
Q  494 aacttaaggataaaacaaaacatagttcagttttcctttcttactct--acacaactgcctaatttta 559  Q
    ||||| ||||||||||| |||||| |||| |||   |||||||||||  |||||||||||||||||||    
T  1336 aacttgaggataaaacataacataattcaatttcaatttcttactctacacacaactgcctaatttta 1403  T

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Target: scaffold0961 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 559
Target Start/End: Complemental strand, 2281 - 2214
Alignment:
Q  494 aacttaaggataaaacaaaacatagttcagttttcctttcttactcta--cacaactgcctaatttta 559  Q
    ||||| ||||||||||| |||||| |||| |||   ||||||||||||  ||||||||||||||||||    
T  2281 aacttgaggataaaacataacataattcaatttcaatttcttactctacacacaactgcctaatttta 2214  T

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