View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8222_low_13 (Length: 268)
Name: NF8222_low_13
Description: NF8222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8222_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 31108617 - 31108856
Alignment:
| Q |
18 |
ttaagaagacaataattagtaagaatagtaacaactctgttccatttaaactgagtattgtagcatttttcttctatgtgatgataacacctcttaacag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31108617 |
ttaagaagacaataattagtaagaatagtaacaactctgttccatttaaactgagtattgtagcatttttcttctatgtgatgataacacctcttaacag |
31108716 |
T |
|
| Q |
118 |
aaaactcaataatgaaagaaaaaagttgatttattccataagattgatcaatgatcaaaactcttttgaaacagttctttctaaataacacaaataaacc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31108717 |
aaaactcaataatgaaagaaaaaagttgatttattccttaagattgatcaatgatcaaaactcttttgaaacagttctttctaaataacacaaataaacc |
31108816 |
T |
|
| Q |
218 |
aacacctctgctaattaacaccatcaactgtaatagtata |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31108817 |
aacacctctgctaattaacaccatcaactgtaataatata |
31108856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 44 - 257
Target Start/End: Original strand, 38898538 - 38898753
Alignment:
| Q |
44 |
agtaacaactctgttccatttaaactgagtattgtagcatttttcttctatgtgatgataacacctcttaacagaaaactcaataatgaaaga--aaaaa |
141 |
Q |
| |
|
||||||| || |||||||||||||| ||||||||||||||||||||| ||||| || |||||| |||||| |||||| |||||||||||||| ||||| |
|
|
| T |
38898538 |
agtaacatctttgttccatttaaaccgagtattgtagcatttttcttatatgtaataataacaattcttaatagaaaattcaataatgaaagagaaaaaa |
38898637 |
T |
|
| Q |
142 |
gttgatttattccataagattgatcaatgatcaaaactcttttgaaacagttctttctaaataacacaaataaaccaacacctctgctaattaacaccat |
241 |
Q |
| |
|
|| ||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| || | |||||||||||||||||||||| |
|
|
| T |
38898638 |
gtcaatttattccataagattgatcaatgattacaactcttttcaaacagttctttctaaataacacaaagaattctacacctctgctaattaacaccag |
38898737 |
T |
|
| Q |
242 |
caactgtaatagtata |
257 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
38898738 |
caactgtaataatata |
38898753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 44 - 263
Target Start/End: Original strand, 31103047 - 31103261
Alignment:
| Q |
44 |
agtaacaactctgttccatttaaactgagtattgtagcatttttcttctatgtgatgataacacctcttaacagaaaactcaataatgaa--agaaaaaa |
141 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| |||||| ||||||||||| |||||||| |
|
|
| T |
31103047 |
agtaacaactctctaccatttaaactgagtattgtagcaattttcttgtatgtgacaataacaattcttaatagaaaaatcaataatgaaagagaaaaaa |
31103146 |
T |
|
| Q |
142 |
gttgatttattccataagattgatcaatgatcaaaactcttttgaaacagttctttctaaataacacaaataaaccaacacctctgctaattaacaccat |
241 |
Q |
| |
|
|| ||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
31103147 |
gtcaatttattccataagattgatcaatgattacaactcttttcaaacagttct-------taacacaaagaattcaacacctctgctaattaacaccat |
31103239 |
T |
|
| Q |
242 |
caactgtaatagtataatctag |
263 |
Q |
| |
|
||||||||||| |||| ||||| |
|
|
| T |
31103240 |
caactgtaataatatattctag |
31103261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University