View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8222_low_14 (Length: 267)
Name: NF8222_low_14
Description: NF8222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8222_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 9590707 - 9590476
Alignment:
| Q |
20 |
tggacggtttaggataaaacatctaaggatattgtccaaagttaacagcagcatgaagagcaggagtagtccatatgataatggaccaagattgaatcag |
119 |
Q |
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| T |
9590707 |
tggacggtttaggataaaacatctaaggatattgtccaaagttaacagcagcatgaagagcaggagtagtccatatgataatggaccaagattgaatcag |
9590608 |
T |
|
| Q |
120 |
gtcttgaagagtttgcatgctacgccaccattgcttgtcttttaagtcaccatgacccttttctacaacttcctttcaccaagtttgtacttcagtgtct |
219 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9590607 |
gtcttgaagagtttgcatgctaggccaccattgcttgtcttttaagtcaccatgacccttttctacaacttcctttcaccaagtttgtacttcagtgtct |
9590508 |
T |
|
| Q |
220 |
tttattcttttgcctcatcagttgggtaatac |
251 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
9590507 |
tttattcttttgcctcatcagttgggtaatac |
9590476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 9606355 - 9606151
Alignment:
| Q |
20 |
tggacggtttaggataaaacatc--taaggatattgtccaaagttaacagcagcatgaagagcaggagtagtccatatgataatggaccaagattgaatc |
117 |
Q |
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| T |
9606355 |
tggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgataatggaacatgattggatt |
9606256 |
T |
|
| Q |
118 |
aggtcttgaagagtttgcatgctacgccaccattgcttgtcttttaagtcaccatgacccttttctacaacttcctttcaccaagtttgtacttcagtgt |
217 |
Q |
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| T |
9606255 |
aaatcttgaatattttgcatcttaggccaccatggcttgtctttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgt |
9606156 |
T |
|
| Q |
218 |
ctttt |
222 |
Q |
| |
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||||| |
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| T |
9606155 |
ctttt |
9606151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 43 - 218
Target Start/End: Original strand, 6456153 - 6456328
Alignment:
| Q |
43 |
taaggatattgtccaaagttaacagcagcatgaagagcaggagtagtccatatgataatggaccaagattgaatcaggtcttgaagagtttgcatgctac |
142 |
Q |
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|||||||| |||||||||||||| || ||||||||||| | || |||||||||||||||||| |||||||||| || |||| || ||||||||| || |
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| T |
6456153 |
taaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataatggagcaagattgaaccaagtctccaacagtttgcatcttag |
6456252 |
T |
|
| Q |
143 |
gccaccattgcttgtcttttaagtcaccatgacccttttctacaacttcctttcaccaagtttgtacttcagtgtc |
218 |
Q |
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| T |
6456253 |
gccaccatggcttgtctttcaagtcaccatgacccttttctacagcttccttccaccaagtttgtagttcagtgtc |
6456328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 6449686 - 6449865
Alignment:
| Q |
43 |
taaggatattgtccaaagttaacagcagcatgaagagcaggagtagtccatatgataatggaccaagattgaatcaggtcttgaagagtttgcatgctac |
142 |
Q |
| |
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|||||||||||||| || |||||||| ||||||||||||| || ||||||||| |||||||| |||||||||| || |||||||| ||||||||| || |
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| T |
6449686 |
taaggatattgtccgaaattaacagctgcatgaagagcagaagcagtccatataataatggagcaagattgaaccaagtcttgaacagtttgcatcttag |
6449785 |
T |
|
| Q |
143 |
gccaccattgcttgtcttttaagtcaccatgacccttttctacaacttcctttcaccaagtttgtacttcagtgtctttt |
222 |
Q |
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|||||||| |||||||||| |||||||| ||||||||||||||| ||||||| ||||| |||| | ||||||||||||| |
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| T |
6449786 |
gccaccatggcttgtctttcaagtcaccgtgacccttttctacagcttccttccaccatttttgaatttcagtgtctttt |
6449865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 202
Target Start/End: Original strand, 6262242 - 6262398
Alignment:
| Q |
46 |
ggatattgtccaaagttaacagcagcatgaagagcaggagtagtccatatgataatggaccaagattgaatcaggtcttgaagagtttgcatgctacgcc |
145 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||| | || ||||||||||||||| ||| |||||||| |||| |||||||||| | ||| |
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| T |
6262242 |
ggatattgtccaaaattaacagctgcatgaagagctgaagcagtccatatgataatactgcaaacttgaatcaactcttcgcgagtttgcattttcggcc |
6262341 |
T |
|
| Q |
146 |
accattgcttgtcttttaagtcaccatgacccttttctacaacttcctttcaccaag |
202 |
Q |
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||||| ||| |||||| ||||||||||||| |||||||||||| || ||||||| |
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| T |
6262342 |
accatggctcgtctttcttgtcaccatgacccacttctacaacttctttccaccaag |
6262398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 42689583 - 42689525
Alignment:
| Q |
143 |
gccaccattgcttgtcttttaagtcaccatgacccttttctacaacttcctttcaccaa |
201 |
Q |
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|||||||| |||||||||| || ||||||||||| || ||||||||||| || |||||| |
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| T |
42689583 |
gccaccatggcttgtctttcaaatcaccatgacctttctctacaacttctttccaccaa |
42689525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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