View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8222_low_19 (Length: 244)
Name: NF8222_low_19
Description: NF8222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8222_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 10467720 - 10467509
Alignment:
| Q |
8 |
agctactaattaattatgaaaatgtatatatttttcgatatattcgtggttcatttaatgtaattcatcctcggaatatgttgttatcgtgtgcatttgc |
107 |
Q |
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| T |
10467720 |
agctactaattaattatgaaaatgtatct----ttcgatatattcgtggtccatttaatgtaattcatcctcggaatatgttgttatcgtgtgcatttgc |
10467625 |
T |
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| Q |
108 |
ttgtcggcaaaataatgctaaattgtgatgtgtgtttttgtataaaccactattatctgaaagtaatcaagcatatggttatgcattttaattaacaaac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10467624 |
ttgtcggcaaaataatgctaaattgtgatgtgtgtttttgtataaaccactattatctgaaagtaatcaagcatatggttatgcattttaattaacaaac |
10467525 |
T |
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| Q |
208 |
caaaattggtattcag |
223 |
Q |
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|||||||||||||||| |
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| T |
10467524 |
caaaattggtattcag |
10467509 |
T |
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