View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8222_low_2 (Length: 448)

Name: NF8222_low_2
Description: NF8222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8222_low_2
NF8222_low_2
[»] chr3 (25 HSPs)
chr3 (1-431)||(7766429-7766859)
chr3 (4-101)||(54017793-54017891)
chr3 (3-99)||(41359743-41359841)
chr3 (7-78)||(33803251-33803324)
chr3 (3-102)||(47964890-47964991)
chr3 (4-79)||(54018196-54018273)
chr3 (3-101)||(22303931-22304031)
chr3 (3-75)||(42342092-42342166)
chr3 (6-101)||(42342364-42342461)
chr3 (3-78)||(37990638-37990715)
chr3 (44-81)||(1634311-1634348)
chr3 (49-101)||(35946652-35946704)
chr3 (3-79)||(3135452-3135530)
chr3 (4-79)||(21832343-21832418)
chr3 (51-90)||(25739412-25739451)
chr3 (47-78)||(25755522-25755553)
chr3 (39-78)||(37726616-37726655)
chr3 (4-76)||(37990978-37991052)
chr3 (47-81)||(22304321-22304355)
chr3 (3-78)||(53577446-53577523)
chr3 (33-78)||(9239927-9239972)
chr3 (3-81)||(22304651-22304731)
chr3 (3-89)||(43346779-43346867)
chr3 (57-101)||(39336208-39336252)
chr3 (5-78)||(41359490-41359565)
[»] chr7 (19 HSPs)
chr7 (3-101)||(1085593-1085692)
chr7 (3-99)||(30244352-30244449)
chr7 (3-101)||(30245159-30245254)
chr7 (3-99)||(30253574-30253667)
chr7 (3-78)||(6054642-6054719)
chr7 (3-77)||(7517662-7517738)
chr7 (33-102)||(30244466-30244534)
chr7 (33-102)||(30253684-30253752)
chr7 (33-101)||(30245269-30245336)
chr7 (33-102)||(7517771-7517840)
chr7 (33-102)||(7518037-7518106)
chr7 (6-68)||(36534795-36534857)
chr7 (6-79)||(14681595-14681668)
chr7 (3-101)||(37533341-37533440)
chr7 (6-75)||(34218036-34218107)
chr7 (6-78)||(40094773-40094847)
chr7 (3-78)||(22567038-22567115)
chr7 (3-89)||(45433323-45433410)
chr7 (3-77)||(47129451-47129527)
[»] chr6 (21 HSPs)
chr6 (3-100)||(10074341-10074439)
chr6 (5-77)||(12071691-12071765)
chr6 (3-78)||(16454989-16455066)
chr6 (3-102)||(3415540-3415642)
chr6 (3-101)||(16454657-16454756)
chr6 (5-78)||(2378210-2378285)
chr6 (4-65)||(12085046-12085109)
chr6 (4-102)||(2578419-2578518)
chr6 (4-77)||(2579872-2579947)
chr6 (3-80)||(2843637-2843716)
chr6 (33-101)||(10073593-10073660)
chr6 (7-78)||(14748341-14748410)
chr6 (5-78)||(29518587-29518662)
chr6 (5-78)||(29519004-29519079)
chr6 (5-78)||(32741263-32741338)
chr6 (5-77)||(1127444-1127518)
chr6 (33-99)||(5832007-5832071)
chr6 (3-89)||(3058308-3058396)
chr6 (47-80)||(3409788-3409821)
chr6 (3-80)||(16107760-16107839)
chr6 (53-101)||(35210554-35210601)
[»] chr8 (20 HSPs)
chr8 (3-100)||(3669769-3669867)
chr8 (3-78)||(40518153-40518230)
chr8 (3-76)||(34834958-34835033)
chr8 (3-75)||(3038292-3038366)
chr8 (3-101)||(9309437-9309535)
chr8 (3-77)||(5915949-5916025)
chr8 (3-101)||(20995393-20995492)
chr8 (3-101)||(30441167-30441266)
chr8 (3-80)||(6651576-6651655)
chr8 (6-79)||(45122709-45122784)
chr8 (5-69)||(9507866-9507932)
chr8 (40-78)||(3037968-3038006)
chr8 (6-89)||(41129073-41129157)
chr8 (5-103)||(3670144-3670242)
chr8 (3-69)||(5420733-5420801)
chr8 (41-78)||(6876861-6876898)
chr8 (46-99)||(9309108-9309160)
chr8 (5-78)||(1014244-1014319)
chr8 (33-73)||(12283986-12284026)
chr8 (6-67)||(45122067-45122130)
[»] chr5 (17 HSPs)
chr5 (3-78)||(36568568-36568643)
chr5 (5-101)||(1028493-1028591)
chr5 (3-78)||(42405597-42405672)
chr5 (3-89)||(6500532-6500619)
chr5 (3-102)||(18603096-18603196)
chr5 (3-78)||(26590909-26590986)
chr5 (40-102)||(27502012-27502073)
chr5 (3-78)||(32487475-32487552)
chr5 (3-89)||(6500904-6500991)
chr5 (3-69)||(34753033-34753101)
chr5 (33-101)||(624310-624378)
chr5 (40-79)||(3295343-3295382)
chr5 (33-79)||(35150819-35150865)
chr5 (3-78)||(40296314-40296391)
chr5 (4-78)||(15370182-15370258)
chr5 (5-102)||(13415737-13415834)
chr5 (40-76)||(36492218-36492254)
[»] chr2 (17 HSPs)
chr2 (3-101)||(37106006-37106105)
chr2 (4-101)||(42514732-42514830)
chr2 (3-100)||(6421813-6421911)
chr2 (4-79)||(6422193-6422270)
chr2 (3-78)||(41283474-41283551)
chr2 (33-102)||(3673182-3673250)
chr2 (3-101)||(6421467-6421566)
chr2 (3-79)||(35580722-35580800)
chr2 (48-102)||(12349154-12349207)
chr2 (3-78)||(36178604-36178681)
chr2 (3-100)||(3672783-3672882)
chr2 (3-69)||(15880345-15880413)
chr2 (3-69)||(36005888-36005956)
chr2 (4-74)||(40679632-40679704)
chr2 (33-90)||(40733631-40733688)
chr2 (4-90)||(40733965-40734053)
chr2 (40-104)||(36178145-36178208)
[»] chr4 (24 HSPs)
chr4 (3-78)||(22183261-22183338)
chr4 (6-101)||(36608636-36608732)
chr4 (3-101)||(25483418-25483517)
chr4 (4-78)||(2740783-2740857)
chr4 (7-78)||(39404104-39404177)
chr4 (3-78)||(54343005-54343082)
chr4 (3-76)||(36629319-36629394)
chr4 (3-75)||(39792860-39792934)
chr4 (3-78)||(18932746-18932823)
chr4 (3-78)||(23817678-23817755)
chr4 (3-102)||(54017568-54017669)
chr4 (3-78)||(55933121-55933198)
chr4 (33-68)||(3244458-3244493)
chr4 (6-78)||(50002511-50002585)
chr4 (3-101)||(54936278-54936376)
chr4 (47-88)||(1731581-1731621)
chr4 (4-78)||(10246002-10246078)
chr4 (3-69)||(32941129-32941197)
chr4 (33-78)||(43174255-43174300)
chr4 (6-76)||(50459806-50459878)
chr4 (3-76)||(1731646-1731721)
chr4 (46-78)||(20695925-20695957)
chr4 (46-101)||(23817431-23817484)
chr4 (46-78)||(41370484-41370516)
[»] chr1 (20 HSPs)
chr1 (4-66)||(66100-66162)
chr1 (3-102)||(32168673-32168774)
chr1 (4-101)||(22077472-22077570)
chr1 (3-75)||(3875333-3875407)
chr1 (3-101)||(34649520-34649620)
chr1 (40-102)||(41157112-41157176)
chr1 (3-78)||(41142454-41142532)
chr1 (6-77)||(3537599-3537672)
chr1 (18-101)||(22077806-22077890)
chr1 (40-102)||(44290434-44290495)
chr1 (48-102)||(50051665-50051718)
chr1 (3-101)||(26661499-26661598)
chr1 (3-99)||(26661877-26661974)
chr1 (3-78)||(14318949-14319026)
chr1 (3-78)||(31767160-31767237)
chr1 (40-90)||(41157496-41157546)
chr1 (3-74)||(48588491-48588564)
chr1 (3-77)||(41759565-41759641)
chr1 (33-69)||(24600322-24600358)
chr1 (33-77)||(37850600-37850644)
[»] scaffold0391 (1 HSPs)
scaffold0391 (46-101)||(1660-1714)
[»] scaffold0702 (1 HSPs)
scaffold0702 (15-78)||(146-211)


Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 7766859 - 7766429
Alignment:
Q  1 cctgccttaaggtgttaggtaagattgtggcgtctctcacttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  7766859 cctgccttaaggttttaggtaagattgtggcgtctctcacttgtatggttgttctagcctcgatgtagatggtccccctaaactccccttgtgacccaac 7766760  T
Q  101 aagaacaatgtcttagtttattgagatgaaaatacatgtacatatttcaaataaaagtgcaatttagaatattttcaatttgaaatttcatagaagttat 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7766759 aagaacaatgtcttagtttattgagaagaaaatacatgtacatatttcaaataaaagtgcaatttagaatattttcaatttgaaatttcatagaagttat 7766660  T
Q  201 acttcgacctttgcccgctacttatcactttatacaattttgtcattttaatccctgccctctcnnnnnnngttacagcgcagtgtaacaacaacacggt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  7766659 acttcgacctttgcccgctacttatcactttatacaattttgtcattttaatccctgccctctcaaaaaaagttacagcgcagtgtaacaacaacacggt 7766560  T
Q  301 ttgatcttaaaatcggtctctaaagtgaccaattatttccggtctctaaatcgattactaaatggcatttttctgaaatcaaatttgcctaagcaatgag 400  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7766559 ttgatcttaaaatcggtctctaaattgaccaattatttccggtctcttaatcgattactaaatggcatttttctgaaatcaaatttgcctaagcaatgag 7766460  T
Q  401 catcaattttgaattaaagggtgttcattat 431  Q
    |||||||||||||||||||||||||||||||    
T  7766459 catcaattttgaattaaagggtgttcattat 7766429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 54017891 - 54017793
Alignment:
Q  4 gccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaaca 101  Q
    |||||||||| || ||||||| ||||| |||||||  |||||| ||||||||||||| |||||||||  ||||||||| ||||||||  |||||||||||    
T  54017891 gccttaaggttttgggtaagagtgtggtgtctctcttacttgtgtggttgttctagcttcgatgtgggcggtccccct-ggctcccccagtgacccaaca 54017793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 41359841 - 41359743
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctcac--ttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaa 99  Q
    ||||||||||| || ||||||| ||||||||||||| |  |||| |||||||||||||||||||||||  ||||||||   |||||||  |||||||||    
T  41359841 tgccttaaggttttgggtaagaatgtggcgtctctctcgcttgtgtggttgttctagcctcgatgtgggcggtccccccgagctcccccagtgacccaa 41359743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 33803324 - 33803251
Alignment:
Q  7 ttaaggtgttaggtaagattgtggcgtctc--tcacttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||| || ||||||| |||||||||||  || ||||| |||||||||||||||||||||||| ||||||||    
T  33803324 ttaaggtattgggtaagagtgtggcgtctccctctcttgtgtggttgttctagcctcgatgtggacggtccccc 33803251  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 47964991 - 47964890
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    ||||||||| | || ||||||| |||||||||||||  |||| |||| ||||||| |||| |||||||| | |||||| ||||| ||||||||||| |||    
T  47964991 tgccttaagattttgggtaagagtgtggcgtctctctcacttatatgattgttctggcctagatgtggacgttccccccaggctgcccttgtgacctaac 47964892  T
Q  101 aa 102  Q
    ||    
T  47964891 aa 47964890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 54018273 - 54018196
Alignment:
Q  4 gccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccct 79  Q
    |||||||||| || ||||||| ||||| ||||||||  ||||| |||||||||||||||||||||||  |||||||||    
T  54018273 gccttaaggttttgggtaagagtgtggtgtctctcatgcttgtgtggttgttctagcctcgatgtgggcggtccccct 54018196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 22304031 - 22303931
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    ||||||||||| || | ||||| ||||| |||||||   ||||  ||||||||||||||||||||||||| ||||||| |||||||||  |||||| |||    
T  22304031 tgccttaaggttttggataagagtgtggtgtctctcttgcttgagtggttgttctagcctcgatgtggattgtcccccaaggctcccccagtgacctaac 22303932  T
Q  101 a 101  Q
    |    
T  22303931 a 22303931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 42342166 - 42342092
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtcc 75  Q
    ||||||||||| || ||||||| |||||||||||||   |||||  ||||||||||||||||||||||| |||||    
T  42342166 tgccttaaggttttgggtaagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtcc 42342092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 42342461 - 42342364
Alignment:
Q  6 cttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctcccctt-gtgacccaaca 101  Q
    |||||||| || ||||||| |||| ||||||||   |||||  ||||||||||||||| ||||||| ||||||||| |||||||||| |||||||||||    
T  42342461 cttaaggttttgggtaagagtgtgacgtctctcttgcttgtgcggttgttctagcctcaatgtggacggtccccct-ggctccccttagtgacccaaca 42342364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 37990715 - 37990638
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| || ||||||| ||||| |||||||   ||||| || ||||||||||||||||||||| ||||||||    
T  37990715 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgtgattgttctagcctcgatgtggacggtccccc 37990638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 1634348 - 1634311
Alignment:
Q  44 tatggttgttctagcctcgatgtggatggtccccctag 81  Q
    |||||||||||||||||||||||||| |||||||||||    
T  1634348 tatggttgttctagcctcgatgtggacggtccccctag 1634311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 35946652 - 35946704
Alignment:
Q  49 ttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaaca 101  Q
    ||||||||||||||||||||| |||||||| | |||||||  |||||||||||    
T  35946652 ttgttctagcctcgatgtggacggtcccccaaagctcccccagtgacccaaca 35946704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 3135530 - 3135452
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccct 79  Q
    ||||||||||| |||| ||||| ||||| ||||||    |||||  ||||||||||||||||||||||| |||||||||    
T  3135530 tgccttaaggttttagataagagtgtggtgtctcttttgcttgtgcggttgttctagcctcgatgtggacggtccccct 3135452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 21832418 - 21832343
Alignment:
Q  4 gccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccct 79  Q
    |||||||||| || |||||||  ||||||||||||   ||||| ||||||||||||||||||||||||  ||||||||    
T  21832418 gccttaaggttttgggtaaga--gtggcgtctctcttgcttgtctggttgttctagcctcgatgtggacagtccccct 21832343  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 25739451 - 25739412
Alignment:
Q  51 gttctagcctcgatgtggatggtccccctaggctcccctt 90  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  25739451 gttctagcctcgatgtggacggtcccccaaggctcccctt 25739412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 78
Target Start/End: Original strand, 25755522 - 25755553
Alignment:
Q  47 ggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||||||||||||||||||||||||    
T  25755522 ggttgttctagcctcgatgtggatggtccccc 25755553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 37726616 - 37726655
Alignment:
Q  39 acttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  37726616 acttgtatagttgttctagcctcgatgtggacggtccccc 37726655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 37991052 - 37990978
Alignment:
Q  4 gccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccc 76  Q
    |||||||||| || ||||||| ||||| |||||||   ||| | |||||||||||||||||||||||| ||||||    
T  37991052 gccttaaggttttgggtaagagtgtggtgtctctcttgcttatgtggttgttctagcctcgatgtggacggtccc 37990978  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 22304321 - 22304355
Alignment:
Q  47 ggttgttctagcctcgatgtggatggtccccctag 81  Q
    ||||||||||||||||||||||| |||||||||||    
T  22304321 ggttgttctagcctcgatgtggacggtccccctag 22304355  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 53577446 - 53577523
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| || ||||||| ||||| |||||||   |  || ||||||||||||||||| |||||||||||||||    
T  53577446 tgccttaaggtcttgggtaagagtgtggtgtctctcttgcaagtgtggttgttctagcctcggtgtggatggtccccc 53577523  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 9239927 - 9239972
Alignment:
Q  33 tctctcacttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||| | |||||||| |||||||||||||||||| ||||||||    
T  9239927 tctctcattagtatggtttttctagcctcgatgtggacggtccccc 9239972  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 22304651 - 22304731
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctag 81  Q
    ||||||||||| || ||||||| ||||| |||||||   |||||  ||||||||||| |||||||||||  ||||||||||    
T  22304651 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagtctcgatgtggacagtccccctag 22304731  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 43346867 - 43346779
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctcccct 89  Q
    ||||||||||| || ||||||| ||||| |||||||   |||||  ||||||||||||||| ||||||| ||||| || | ||||||||    
T  43346867 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctctatgtggacggtcctccgaagctcccct 43346779  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 39336252 - 39336208
Alignment:
Q  57 gcctcgatgtggatggtccccctaggctccccttgtgacccaaca 101  Q
    |||| |||||||||||||||||| ||||||||| |||| ||||||    
T  39336252 gcctggatgtggatggtcccccttggctcccctcgtgatccaaca 39336208  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 41359565 - 41359490
Alignment:
Q  5 ccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||| || ||||||| ||||||||||||    |||||  ||||||||||||||| ||||||| ||||||||    
T  41359565 ccttaaggttttgggtaagagtgtggcgtctcttttgcttgtgcggttgttctagcctcaatgtggacggtccccc 41359490  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 1085692 - 1085593
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    ||||||||||| || ||||||| |||||||||||||  |||||| |||||||||||||||||||||||| ||||||||| |||||||||  |||||||||    
T  1085692 tgccttaaggttttgggtaagagtgtggcgtctctcttacttgtgtggttgttctagcctcgatgtggacggtccccct-ggctcccctcatgacccaac 1085594  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 30244352 - 30244449
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctc--tcacttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaa 99  Q
    ||||||||||| || ||||||| ||||| |||||  |||||||| ||||||||| ||||||||||||||||||||||| | ||||||||||||||||||    
T  30244352 tgccttaaggttttgggtaagagtgtggtgtctctctcacttgtgtggttgttcaagcctcgatgtggatggtcccccga-gctccccttgtgacccaa 30244449  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 30245159 - 30245254
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctcacttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaaca 101  Q
    ||||||||||| || ||||||| ||||| |||||||  |||| ||||||||| ||||||||||||||||||||||| | |||||||| |||||||||||    
T  30245159 tgccttaaggttttgggtaagagtgtggtgtctctc--ttgtgtggttgttcaagcctcgatgtggatggtcccccga-gctcccctcgtgacccaaca 30245254  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 30253574 - 30253667
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctcacttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaa 99  Q
    ||||||||||| || ||||||| ||||| |||||||  |||| ||||||||| ||||||||||||||||||||||| | |||||||| |||||||||    
T  30253574 tgccttaaggttttgggtaagagtgtggtgtctctc--ttgtgtggttgttcaagcctcgatgtggatggtcccccga-gctcccctcgtgacccaa 30253667  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 6054642 - 6054719
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| || ||||||| ||||| |||||||  |||||||||||||||||||||| |||||||| ||||||||    
T  6054642 tgccttaaggttttgggtaagagtgtggtgtctctcctacttgtatggttgttctagccttgatgtggacggtccccc 6054719  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 7517662 - 7517738
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtct--ctcacttgtatggttgttctagcctcgatgtggatggtcccc 77  Q
    ||||||||||| || ||||||| ||||| ||||  ||||||||| ||||||||||||||||||||||| ||||||||    
T  7517662 tgccttaaggttttgggtaagagtgtggtgtctgtctcacttgtgtggttgttctagcctcgatgtgggtggtcccc 7517738  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 30244466 - 30244534
Alignment:
Q  33 tctctcacttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaacaa 102  Q
    |||||||||||| ||||||||| |||||||||||||| |||||| | ||||||||||  |||||||||||    
T  30244466 tctctcacttgtgtggttgttcaagcctcgatgtggacggtccctc-aggctcccctcatgacccaacaa 30244534  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 30253684 - 30253752
Alignment:
Q  33 tctctcacttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaacaa 102  Q
    |||||||||||| ||||||||| ||||||||||||||  ||||||| ||||||||||  |||||||||||    
T  30253684 tctctcacttgtgtggttgttcaagcctcgatgtggactgtccccc-aggctcccctcatgacccaacaa 30253752  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 30245269 - 30245336
Alignment:
Q  33 tctctcacttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaaca 101  Q
    |||||||||||| ||||||||| |||||| ||||||| |||||||| | ||||||||| ||||||||||    
T  30245269 tctctcacttgtgtggttgttcaagcctcaatgtggacggtccccc-atgctccccttatgacccaaca 30245336  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 7517771 - 7517840
Alignment:
Q  33 tctctcacttgtatggttgttctagcctcgatgtggatggtccccctaggctcccct-tgtgacccaacaa 102  Q
    |||||||||||| ||||||||||||||||||| ||| |||| ||||| |||||||||  ||||||||||||    
T  7517771 tctctcacttgtgtggttgttctagcctcgatatgggtggt-ccccttggctcccctcagtgacccaacaa 7517840  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 7518037 - 7518106
Alignment:
Q  33 tctctcacttgtatggttgttctagcctcgatgtggatggtccccctaggctcccct-tgtgacccaacaa 102  Q
    |||||||||||| ||||||||||||||||||| ||| |||| ||||| |||||||||  ||||||||||||    
T  7518037 tctctcacttgtgtggttgttctagcctcgatatgggtggt-ccccttggctcccctcagtgacccaacaa 7518106  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 36534857 - 36534795
Alignment:
Q  6 cttaaggtgttaggtaagattgtggcgtctctcacttgtatggttgttctagcctcgatgtgg 68  Q
    |||||||| || ||||||| |||||||||||||||  || ||||||||| |||||||||||||    
T  36534857 cttaaggttttgggtaagagtgtggcgtctctcacaagtgtggttgttccagcctcgatgtgg 36534795  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 14681595 - 14681668
Alignment:
Q  6 cttaaggtgttaggtaagattgtggcgtctctcacttgtatggttgttctagcctcgatgtggatggtccccct 79  Q
    |||||||| || ||||||| ||||| |||||||||  || ||||||||||||||| |||||||| |||| ||||    
T  14681595 cttaaggttttgggtaagagtgtggtgtctctcacaagtgtggttgttctagccttgatgtggacggtctccct 14681668  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 37533440 - 37533341
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    ||||||||||| || ||||||| ||||| ||||||    |||||  ||||||||||||||||||||||| ||||||||   |||||||| ||||||||||    
T  37533440 tgccttaaggttttgggtaagagtgtggtgtctcttttgcttgtgcggttgttctagcctcgatgtggacggtccccc-gcgctcccctcgtgacccaac 37533342  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 34218107 - 34218036
Alignment:
Q  6 cttaaggtgttaggtaagattgtggcgtctctcac--ttgtatggttgttctagcctcgatgtggatggtcc 75  Q
    |||||||| || ||||||| ||||| ||||||| |  |||||||||||||| |||||||||||||| |||||    
T  34218107 cttaaggttttgggtaagagtgtggtgtctctctcgcttgtatggttgttcaagcctcgatgtggacggtcc 34218036  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 40094847 - 40094773
Alignment:
Q  6 cttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    |||||||| || ||||||| |||||||||||||   |||||  ||||||||||||||||||||||  ||||||||    
T  40094847 cttaaggttttgggtaagagtgtggcgtctctcttgcttgtgaggttgttctagcctcgatgtggtcggtccccc 40094773  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 22567115 - 22567038
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| || ||||||| ||||| |||||||   |||||  ||||||||  ||||||||||||||||||||||    
T  22567115 tgccttaaggtttttggtaagagtgtggtgtctctcttgcttgtggggttgttcgggcctcgatgtggatggtccccc 22567038  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 45433323 - 45433410
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctcccct 89  Q
    ||||||||| | || ||||||| ||||| |||||||   |||||  ||||||||||||||||||||||  ||||||||| |||||||||    
T  45433323 tgccttaagattttgggtaagagtgtggtgtctctcttgcttgtggggttgttctagcctcgatgtggtcggtccccct-ggctcccct 45433410  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 47129451 - 47129527
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtcccc 77  Q
    ||||||||||| || ||||||| ||||| |||||||   |||||  ||||| ||||||||||||||||| |||||||    
T  47129451 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgatctagcctcgatgtggacggtcccc 47129527  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 10074439 - 10074341
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    ||||||||||| || ||||||| ||||| |||||||  ||| || ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  10074439 tgccttaaggttttgggtaagagtgtggtgtctctctcactagtgtggttgttctagcctcgatgtggatagtccccc-aggctccccttgtgacccaac 10074341  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 12071765 - 12071691
Alignment:
Q  5 ccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtcccc 77  Q
    ||||||||| || ||||||| |||||||||||||  |||||| |||||||||||||||||||||| | |||||||    
T  12071765 ccttaaggttttgggtaagagtgtggcgtctctctcacttgtgtggttgttctagcctcgatgtgaacggtcccc 12071691  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 16454989 - 16455066
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| || ||||||| |||||||||||||   |||||  ||||||||||||||||||||||| ||||||||    
T  16454989 tgccttaaggttttgggtaagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtccccc 16455066  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 3415540 - 3415642
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgt--tctagcctcgatgtggatggtccccctaggctccccttgtgaccca 98  Q
    ||||||||||| || ||||||| ||||| |||||||   |||||  ||||||  ||||||||||||||||| |||||||| | |||||||||||||||||    
T  3415540 tgccttaaggtttttggtaagagtgtggtgtctctcttgcttgtgcggttgttctctagcctcgatgtggaaggtccccc-aagctccccttgtgaccca 3415638  T
Q  99 acaa 102  Q
    ||||    
T  3415639 acaa 3415642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 16454657 - 16454756
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    ||||||||| | || | ||||| |||||||||||||   |||||  ||||||||||||||||||||||| |||||||| | |||||||| ||||||||||    
T  16454657 tgccttaagattttggataagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtcccccga-gctcccctcgtgacccaac 16454755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 2378210 - 2378285
Alignment:
Q  5 ccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||| |||||||||| ||||| |||||||   ||||  |||||||||||||||||||||||| ||||||||    
T  2378210 ccttaaggttttaggtaagaatgtggtgtctctcttgcttgagtggttgttctagcctcgatgtggacggtccccc 2378285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 12085109 - 12085046
Alignment:
Q  4 gccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatg 65  Q
    |||||||||| || ||||||| |||||||||||||  |||||| ||||||||||||||||||||    
T  12085109 gccttaaggttttgggtaagagtgtggcgtctctctcacttgtgtggttgttctagcctcgatg 12085046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 2578518 - 2578419
Alignment:
Q  4 gccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaaca 101  Q
    |||||||||| || ||||||| ||||| ||||||    |||||  ||||||||||||||||||||||| |||||||||| || |||||  ||||||||||    
T  2578518 gccttaaggttttgggtaagagtgtggtgtctcttttgcttgtgcggttgttctagcctcgatgtggacggtcccccta-gcccccctcatgacccaaca 2578420  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 2579947 - 2579872
Alignment:
Q  4 gccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtcccc 77  Q
    |||||||||| || ||||||| ||||| |||||||   |||||  ||||||||||||||||||||||| |||||||    
T  2579947 gccttaaggttttgggtaagaatgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggaaggtcccc 2579872  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 2843637 - 2843716
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtcccccta 80  Q
    ||||||||||| || ||||||| |||||  ||||||   ||||  |||||||||||||||||||||||| ||||||||||    
T  2843637 tgccttaaggttttgggtaagagtgtggtatctctcttgcttgagtggttgttctagcctcgatgtggacggtcccccta 2843716  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 10073660 - 10073593
Alignment:
Q  33 tctctcacttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaaca 101  Q
    ||||||||| || ||||||||||||| |||||||||| |||||  | |||||||||| |||||||||||    
T  10073660 tctctcactagtgtggttgttctagcatcgatgtggacggtccttc-aggctcccctcgtgacccaaca 10073593  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 14748410 - 14748341
Alignment:
Q  7 ttaaggtgttaggtaagattgtggcgtctctcacttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||| || ||||||| |||||  |||||  ||||| |||||||||||||||||||||||| ||||||||    
T  14748410 ttaaggttttgggtaagagtgtgg--tctcttgcttgtgtggttgttctagcctcgatgtggacggtccccc 14748341  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 29518587 - 29518662
Alignment:
Q  5 ccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||| || ||||||| ||||| |||||||   |||||  ||||||||||||||||||||||| ||||||||    
T  29518587 ccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtccccc 29518662  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 29519004 - 29519079
Alignment:
Q  5 ccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||| || ||||||| ||||| |||||||   |||||  ||||||||||||||||||||||| ||||||||    
T  29519004 ccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtccccc 29519079  T

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Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 32741263 - 32741338
Alignment:
Q  5 ccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||| || ||||||| ||||| |||||||   |||||  ||||||||||||||||||||||| ||||||||    
T  32741263 ccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtccccc 32741338  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 1127444 - 1127518
Alignment:
Q  5 ccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtcccc 77  Q
    ||||||||| || ||||||| |||||||||||||  |||| | |||||| |||| ||||||||||| ||||||||    
T  1127444 ccttaaggttttgggtaagagtgtggcgtctctcttacttatgtggttgctctaacctcgatgtgggtggtcccc 1127518  T

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Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 5832071 - 5832007
Alignment:
Q  33 tctctcacttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaa 99  Q
    ||||| |||||| ||||||||||||||||||||| || |||||||  ||||||||||  ||||||||    
T  5832071 tctcttacttgtgtggttgttctagcctcgatgtagacggtcccc--aggctcccctcatgacccaa 5832007  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 3058308 - 3058396
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctcccct 89  Q
    ||||||||||| || ||||||| ||||| |||||||   |||||| ||| |||||| ||||||||||||  ||||||| | ||||||||    
T  3058308 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgtagggtggttctaacctcgatgtggaccgtcccccaaagctcccct 3058396  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 3409788 - 3409821
Alignment:
Q  47 ggttgttctagcctcgatgtggatggtcccccta 80  Q
    ||||||||||||||||||||||| ||||||||||    
T  3409788 ggttgttctagcctcgatgtggacggtcccccta 3409821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 16107760 - 16107839
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtcccccta 80  Q
    ||||||||||| || ||||||| ||||| |||||||   |||||  ||||| |||||||||||||||| |||| ||||||    
T  16107760 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgctctagcctcgatgtgggtggtaccccta 16107839  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 35210554 - 35210601
Alignment:
Q  53 tctagcctcgatgtggatggtccccctaggctccccttgtgacccaaca 101  Q
    ||||||||||||||||| ||||||||| ||||||||  |||||||||||    
T  35210554 tctagcctcgatgtggacggtccccct-ggctcccccagtgacccaaca 35210601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 3669769 - 3669867
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    ||||||||||| || ||||||| ||||| |||||||   |||||  |||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  3669769 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggatggtcccccta-gctcccctcgtgacccaac 3669867  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 40518153 - 40518230
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| || ||||||| |||||||||||||   ||||| ||||||||||||||| |||||||| ||||||||    
T  40518153 tgccttaaggttttgggtaagagtgtggcgtctctcttgcttgtgtggttgttctagccttgatgtggacggtccccc 40518230  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 34834958 - 34835033
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccc 76  Q
    ||||||||||| || ||||||| ||||| |||||||   ||||| |||||||||||||||||||||||||| ||||    
T  34834958 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgtggttgttctagcctcgatgtggatgatccc 34835033  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 3038366 - 3038292
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtcc 75  Q
    ||||||||||| || ||||||| |||||| ||||||   ||||| |||||||||||||||||||||||| |||||    
T  3038366 tgccttaaggttttgggtaagagtgtggcatctctcttgcttgtgtggttgttctagcctcgatgtggacggtcc 3038292  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 9309437 - 9309535
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctcact-tgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaaca 101  Q
    |||||||||||||  ||||||| ||||| ||||||| |  | | |||||||||||||||||||||||| |||||||| | |||||||  |||||||||||    
T  9309437 tgccttaaggtgtcgggtaagagtgtggtgtctctctcagtatgtggttgttctagcctcgatgtggacggtcccccga-gctcccccagtgacccaaca 9309535  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 5915949 - 5916025
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtcccc 77  Q
    ||||||||||| || ||||||| ||||| |||||||   |||||  ||||||||||||||||||||||| |||||||    
T  5915949 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtcccc 5916025  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 20995492 - 20995393
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    ||||||||||| || ||||||| ||||| |||||||  |||||| |||||| ||| |||| ||| ||| ||||||| || ||||||||| ||||||||||    
T  20995492 tgccttaaggttttgggtaagaatgtggtgtctctctcacttgtgtggttgctctggcctagatatgggtggtccctct-ggctcccctcgtgacccaac 20995394  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 30441167 - 30441266
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    ||||||||||| || ||||||| ||||| |||||||   |||||  |||||||||||||||||||||||  || | ||| ||||||||| ||||||||||    
T  30441167 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacagt-caccttggctcccctcgtgacccaac 30441265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 6651576 - 6651655
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtcccccta 80  Q
    ||||||||||| || ||||||| ||||| |||||||   |||||  | |||||||| |||||||||||||||||||||||    
T  6651576 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgcgattgttctaacctcgatgtggatggtcccccta 6651655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 45122709 - 45122784
Alignment:
Q  6 cttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccct 79  Q
    |||||||| || |||| || |||||||||||||   ||||| ||||||||| |||||||||||||| |||||||||    
T  45122709 cttaaggttttgggtatgagtgtggcgtctctcttgcttgtgtggttgttcaagcctcgatgtggaaggtccccct 45122784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 9507866 - 9507932
Alignment:
Q  5 ccttaaggtgttaggtaagattgtggcgtctct--cacttgtatggttgttctagcctcgatgtgga 69  Q
    ||||||||| || ||||||| ||||||||||||  | ||| ||||||||||| ||||||||||||||    
T  9507866 ccttaaggttttgggtaagagtgtggcgtctctatctcttatatggttgttcaagcctcgatgtgga 9507932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 3038006 - 3037968
Alignment:
Q  40 cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  3038006 cttgtgtggttgttctagcctcgatgtggacggtccccc 3037968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 41129073 - 41129157
Alignment:
Q  6 cttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccctaggctcccct 89  Q
    |||||||| || |||| || ||||| |||||||  |||||| ||||||||| | |||||||||||| |||||||| ||||||||||    
T  41129073 cttaaggttttgggtatgagtgtggtgtctctcttacttgtgtggttgttcaaacctcgatgtggacggtccccc-aggctcccct 41129157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 3670144 - 3670242
Alignment:
Q  5 ccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaacaa 102  Q
    ||||||||| || ||||||| ||||| |||||||   |||||  ||||||||||||||||||||||| |||  ||||| |||||||| |||||| |||||    
T  3670144 ccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggt-tcccta-gctcccctcgtgacctaacaa 3670241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 5420733 - 5420801
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctc--tcacttgtatggttgttctagcctcgatgtgga 69  Q
    ||||||||||| ||  |||||| |||| ||||||  |||||||| ||||||||| ||||||||||||||    
T  5420733 tgccttaaggttttttgtaagagtgtgacgtctccctcacttgtgtggttgttcaagcctcgatgtgga 5420801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 6876898 - 6876861
Alignment:
Q  41 ttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  6876898 ttgtgtggttgttctagcctcgatgtggacggtccccc 6876861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 9309108 - 9309160
Alignment:
Q  46 tggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaa 99  Q
    |||||||||||||||||||||||| |||||||| | |||||||  |||||||||    
T  9309108 tggttgttctagcctcgatgtggacggtcccccga-gctcccccagtgacccaa 9309160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 1014319 - 1014244
Alignment:
Q  5 ccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    |||||| || || ||||||| ||||| |||||||   |||||  ||||||||||||||||||||||||||| ||||    
T  1014319 ccttaaagttttgggtaagagtgtggtgtctctcctgcttgtgcggttgttctagcctcgatgtggatggttcccc 1014244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 12283986 - 12284026
Alignment:
Q  33 tctctcacttgtatggttgttctagcctcgatgtggatggt 73  Q
    |||||||||||| |||||||||||||||| |||||| ||||    
T  12283986 tctctcacttgtgtggttgttctagcctctatgtgggtggt 12284026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 45122130 - 45122067
Alignment:
Q  6 cttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtg 67  Q
    |||||||| || ||||||| ||||| |||||||  ||||||  |||||||||||||||||||||    
T  45122130 cttaaggttttgggtaagagtgtggtgtctctcttacttgtggggttgttctagcctcgatgtg 45122067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 36568643 - 36568568
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctcacttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| || ||||||| ||||||||||||| ||||| ||||||||||| |||||||||||| ||||||||    
T  36568643 tgccttaaggtttttggtaagagtgtggcgtctctctcttgtgtggttgttctatcctcgatgtggaaggtccccc 36568568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 1028591 - 1028493
Alignment:
Q  5 ccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccctaggctcccct-tgtgacccaaca 101  Q
    ||||||||| || ||||||| |||||||||||||  ||||||  ||||||||||||||||||||||| |||||||||| ||||||||  |||||||||||    
T  1028591 ccttaaggtttttggtaagagtgtggcgtctctctcacttgtgcggttgttctagcctcgatgtggacggtcccccta-gctcccctcagtgacccaaca 1028493  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 42405672 - 42405597
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctcacttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| || ||||||| ||||| ||||||  |||||  ||||||||||||||||||||||| ||||||||    
T  42405672 tgccttaaggttttgggtaagagtgtggtgtctcttgcttgtgcggttgttctagcctcgatgtggacggtccccc 42405597  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 6500532 - 6500619
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctcccct 89  Q
    ||||||||||| || ||||||| ||||| |||||||   |||||  ||||||||||||||||||||||| |||||||| ||||||||||    
T  6500532 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtccccc-aggctcccct 6500619  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 18603196 - 18603096
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    ||||||||||| || ||||||| |||||| ||||||   ||||| |||| ||||||||||||||||||| ||| | ||| ||||||||| || |||||||    
T  18603196 tgccttaaggttttgggtaagagtgtggcatctctcttgcttgtgtggtagttctagcctcgatgtggacggttctcct-ggctcccctcgtaacccaac 18603098  T
Q  101 aa 102  Q
    ||    
T  18603097 aa 18603096  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 26590986 - 26590909
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| ||  |||||| |||||||||||||  ||| || ||||||||||| |||||||||||||||| ||||    
T  26590986 tgccttaaggttttgagtaagagtgtggcgtctctctcactagtgtggttgttctaacctcgatgtggatggttcccc 26590909  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 27502073 - 27502012
Alignment:
Q  40 cttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaacaa 102  Q
    ||||| ||||||||||| |||||||||||| |||||||||| ||||||||  |||||||||||    
T  27502073 cttgtgtggttgttctatcctcgatgtggacggtcccccta-gctcccctcatgacccaacaa 27502012  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 32487475 - 32487552
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| || ||||||| |||| ||| ||||   ||| | |||||||||||||||||||||||||||||||||    
T  32487475 tgccttaaggttttgggtaagagtgtgacgtatctcttgcttatgtggttgttctagcctcgatgtggatggtccccc 32487552  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 6500904 - 6500991
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccctaggctcccct 89  Q
    ||||||||||| || | ||||| ||||| |||||||  ||||||  |||| |||||||||||||||||| |||||||| ||||||||||    
T  6500904 tgccttaaggttttggataagagtgtggtgtctctcttacttgtgcggttattctagcctcgatgtggacggtccccc-aggctcccct 6500991  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 34753101 - 34753033
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtgga 69  Q
    ||||||||||| || ||||||| |||||||||||||   |||||  |||||||||||||||||||||||    
T  34753101 tgccttaaggttttgggtaagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtgga 34753033  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 624310 - 624378
Alignment:
Q  33 tctctcacttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaaca 101  Q
    ||||||||||||  ||||||||||||||||||||||| ||| |||| ||   ||||| |||||||||||    
T  624310 tctctcacttgtggggttgttctagcctcgatgtggacggttccccgagctccccctagtgacccaaca 624378  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 3295382 - 3295343
Alignment:
Q  40 cttgtatggttgttctagcctcgatgtggatggtccccct 79  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  3295382 cttgtgtggttgttctagcctcgatgtggacggtccccct 3295343  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 35150819 - 35150865
Alignment:
Q  33 tctctcacttgtatggttgttctagcctcgatgtggatggtccccct 79  Q
    ||||||||| || || ||||| |||||||||||||||||||||||||    
T  35150819 tctctcactagtgtgattgttttagcctcgatgtggatggtccccct 35150865  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 40296391 - 40296314
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    |||||| |||| || ||||||| ||||| |||||||   |||||  ||||||||||||||||||||||| ||||||||    
T  40296391 tgccttgaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtccccc 40296314  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 15370182 - 15370258
Alignment:
Q  4 gccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    |||||||||| || ||||||| ||||| |||||||   |||||  | ||||||||||||||||||||| ||||||||    
T  15370182 gccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgggattgttctagcctcgatgtggacggtccccc 15370258  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 13415834 - 13415737
Alignment:
Q  5 ccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaacaa 102  Q
    ||||||||| || ||||||| |||||||||||||   |||||  |||||||||||||||||  |||  ||||||| | ||||||||| ||||||||||||    
T  13415834 ccttaaggttttgggtaagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgaaatgg-cggtccccgt-ggctcccctggtgacccaacaa 13415737  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 36492254 - 36492218
Alignment:
Q  40 cttgtatggttgttctagcctcgatgtggatggtccc 76  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  36492254 cttgtgtggttgttctagcctcgatgtggacggtccc 36492218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 37106006 - 37106105
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    ||||||||| | || ||||||| ||||| |||||||   |||||| ||||||||||||||||||||||| |||||||| | |||||||||||||||||||    
T  37106006 tgccttaagattttgggtaagagtgtggtgtctctcttgcttgtacggttgttctagcctcgatgtggacggtcccccga-gctccccttgtgacccaac 37106104  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 42514732 - 42514830
Alignment:
Q  4 gccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaaca 101  Q
    |||||||| | || ||||||| |||||||||||||  ||||||  ||||||||||||||||||||||| |||||||| | |||||||| |||||||||||    
T  42514732 gccttaagattttgggtaagagtgtggcgtctctcttacttgtggggttgttctagcctcgatgtggacggtcccccga-gctcccctcgtgacccaaca 42514830  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 6421813 - 6421911
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    ||||||||||| || ||||||| ||||| |||||||  |||||| |||||||||| ||||||||||||| |||||||| | ||||||||  |||||||||    
T  6421813 tgccttaaggttttgggtaagagtgtggtgtctctctaacttgtgtggttgttctggcctcgatgtggacggtcccccga-gctcccctcatgacccaac 6421911  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 6422193 - 6422270
Alignment:
Q  4 gccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccct 79  Q
    |||||||||| |||||||||| ||||| |||||||   ||||| ||||||||||||||||||||||||  ||||||||    
T  6422193 gccttaaggttttaggtaagagtgtggtgtctctcttgcttgtgtggttgttctagcctcgatgtggactgtccccct 6422270  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 41283551 - 41283474
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| |||||||||| |||||||||||||    |||| ||||||||||||||| |||||||| ||||||||    
T  41283551 tgccttaaggttttaggtaagagtgtggcgtctctcttgtttgtgtggttgttctagccttgatgtggacggtccccc 41283474  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 3673182 - 3673250
Alignment:
Q  33 tctctcacttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaacaa 102  Q
    ||||| ||| || |||||||||||||||||||||||| ||||||||| ||||||||  ||||||||||||    
T  3673182 tctcttactagtgtggttgttctagcctcgatgtggacggtccccct-ggctcccccagtgacccaacaa 3673250  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 6421467 - 6421566
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    |||||| |||| || ||||||| ||||| |||||||   |||||  ||||||||||| ||||||||||| |||||||| | |||||||| ||||||||||    
T  6421467 tgccttgaggttttgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagtctcgatgtggacggtcccccga-gctcccctcgtgacccaac 6421565  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 35580800 - 35580722
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctcac--ttgtatggttgttctagcctcgatgtggatggtccccct 79  Q
    ||||||||||| || ||||||| || ||||||||||    ||||  ||||||||||||||||||||||| |||||||||    
T  35580800 tgccttaaggttttgggtaagagtgcggcgtctctcttgtttgtggggttgttctagcctcgatgtggacggtccccct 35580722  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 12349154 - 12349207
Alignment:
Q  48 gttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaacaa 102  Q
    ||||||||||||||||| ||||  ||||| | |||||||||||||||||||||||    
T  12349154 gttgttctagcctcgatatggacagtccctc-aggctccccttgtgacccaacaa 12349207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 36178681 - 36178604
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| || ||||||| ||||| |||||||   ||||| |||||||||||||||| ||||||| | ||||||    
T  36178681 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgtggttgttctagcctctatgtggacgatccccc 36178604  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 3672783 - 3672882
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccctaggct-ccccttgtgacccaa 99  Q
    ||||||||| | || ||||||| ||||| |||||||  | |||| |||||||||||| ||||||||||| ||| ||||| |||| ||||| |||||||||    
T  3672783 tgccttaagattttgggtaagagtgtggtgtctctcttaattgtgtggttgttctagtctcgatgtggacggttcccct-ggctccccctagtgacccaa 3672881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 15880345 - 15880413
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtgga 69  Q
    ||||||||||| || ||||||| |||||||||||||   |||||  ||||||| |||||||||||||||    
T  15880345 tgccttaaggttttgggtaagagtgtggcgtctctcttgcttgtgcggttgttttagcctcgatgtgga 15880413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 36005956 - 36005888
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtgga 69  Q
    ||||||||||| || ||||| | |||||||||||||   |||||  |||||||||||||||||||||||    
T  36005956 tgccttaaggttttgggtaaaagtgtggcgtctctcttgcttgtggggttgttctagcctcgatgtgga 36005888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 40679704 - 40679632
Alignment:
Q  4 gccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtc 74  Q
    |||||||| | || ||||||| |||||||||||||  ||||||  ||||||||||| ||||||||||| ||||    
T  40679704 gccttaagattttgggtaagagtgtggcgtctctcttacttgtggggttgttctagtctcgatgtggacggtc 40679632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 40733631 - 40733688
Alignment:
Q  33 tctctcacttgtatggttgttctagcctcgatgtggatggtccccctaggctcccctt 90  Q
    |||||| ||||| |||| |||| || ||||||||||||||||||||| | ||||||||    
T  40733631 tctctcgcttgtgtggtagttcaagtctcgatgtggatggtcccccttgactcccctt 40733688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 40733965 - 40734053
Alignment:
Q  4 gccttaaggtgttaggtaagattgtggcgtct--ctcacttgtatggttgttctagcctcgatgtggatggtccccctaggctcccctt 90  Q
    ||||||| || || ||||||| ||||| ||||  ||| ||||| ||||||||| || ||||||||||| ||||||||| | ||||||||    
T  40733965 gccttaaagttttgggtaagagtgtggtgtctgtctcgcttgtgtggttgttcaagtctcgatgtggacggtcccccttgactcccctt 40734053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 36178208 - 36178145
Alignment:
Q  40 cttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaacaaga 104  Q
    ||||| |||||||| |||||||||||| || ||||||||   |||||||| ||||||||||||||    
T  36178208 cttgtgtggttgttatagcctcgatgtagacggtccccc-gcgctcccctcgtgacccaacaaga 36178145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 22183338 - 22183261
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| || | ||||| |||||||||||||  ||||||| ||||||||||||||||||||||| ||||||||    
T  22183338 tgccttaaggttttggataagagtgtggcgtctctctcacttgtacggttgttctagcctcgatgtggacggtccccc 22183261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 36608732 - 36608636
Alignment:
Q  6 cttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaaca 101  Q
    |||||||| || ||||||| ||||| |||||||  ||| || |||||||||||||||||||||||| |||||||| | |||||||| |||||||||||    
T  36608732 cttaaggttttgggtaagagtgtggtgtctctctcactagtgtggttgttctagcctcgatgtggacggtccccc-aagctcccctcgtgacccaaca 36608636  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 25483418 - 25483517
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    ||||||||||| || ||||||| ||||| |||||||   ||||| |||||||||||||||||||||||| |||| |||| ||||||||  ||||||||||    
T  25483418 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgtggttgttctagcctcgatgtggacggtctccct-ggctcccccagtgacccaac 25483516  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 2740783 - 2740857
Alignment:
Q  4 gccttaaggtgttaggtaagattgtggcgtctctcacttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    |||||||||| ||| |||||| ||||||||||||| |   | ||||||||||||||||||| |||||||||||||    
T  2740783 gccttaaggttttacgtaagagtgtggcgtctctctcacttgtggttgttctagcctcgatatggatggtccccc 2740857  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 39404104 - 39404177
Alignment:
Q  7 ttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||| || ||||||| |||||||||||||   ||||| |||||||||||||||||||||||| ||||||||    
T  39404104 ttaaggttttgggtaagagtgtggcgtctctcttgcttgtgtggttgttctagcctcgatgtggacggtccccc 39404177  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 54343082 - 54343005
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| || ||||||| ||||| |||||||   ||||  |||||||||||||||||||||||||||||||||    
T  54343082 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgagtggttgttctagcctcgatgtggatggtccccc 54343005  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 36629319 - 36629394
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccc 76  Q
    ||||||||||| || ||||||| ||||| |||||||   ||||| |||||||||||||||||||||||| ||||||    
T  36629319 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgtggttgttctagcctcgatgtggacggtccc 36629394  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 39792934 - 39792860
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtcc 75  Q
    ||||||||||| || ||||||| ||||| |||||||   ||||| |||||||||||||||||||||||| |||||    
T  39792934 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgtggttgttctagcctcgatgtggacggtcc 39792860  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 18932823 - 18932746
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| |||||||||| ||||| |||||||  |||||  |||||||| ||||||||||||| | ||||||||    
T  18932823 tgccttaaggttttaggtaagagtgtggtgtctctcttacttgagtggttgttatagcctcgatgtgtacggtccccc 18932746  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 23817755 - 23817678
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| || ||||||| ||||| |||||||   || || |||||||||||||||||||||||| ||||||||    
T  23817755 tgccttaaggttttgggtaagagtgtggtgtctctcttgctagtgtggttgttctagcctcgatgtggacggtccccc 23817678  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 54017669 - 54017568
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    ||||||||||| |||||||||| ||||  |||||||   ||| | |||||||||||||||||||||||| |||| ||||||   |||||  |||||||||    
T  54017669 tgccttaaggttttaggtaagagtgtgatgtctctcttgcttatgtggttgttctagcctcgatgtggacggtctccctagctccccctcctgacccaac 54017570  T
Q  101 aa 102  Q
    ||    
T  54017569 aa 54017568  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 55933198 - 55933121
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    |||||||| || || ||||||| ||||| |||||||  |||||||  |||||||||||||||||||||| ||||||||    
T  55933198 tgccttaaagttttgggtaagagtgtggtgtctctcttacttgtacagttgttctagcctcgatgtggacggtccccc 55933121  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 68
Target Start/End: Complemental strand, 3244493 - 3244458
Alignment:
Q  33 tctctcacttgtatggttgttctagcctcgatgtgg 68  Q
    |||||||||||||||||||||| |||||||||||||    
T  3244493 tctctcacttgtatggttgttccagcctcgatgtgg 3244458  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 50002511 - 50002585
Alignment:
Q  6 cttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    |||||||| || ||||||| ||||| |||||||  ||||||  ||||||||||||||||||||||  ||||||||    
T  50002511 cttaaggttttgggtaagagtgtggtgtctctcttacttgtgcggttgttctagcctcgatgtgggcggtccccc 50002585  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 54936278 - 54936376
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctcact-tgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaaca 101  Q
    ||||||||||| || ||||||| ||||| ||||||| |  | | ||||||||||||||||||||||||  ||||||| | |||||||  |||||||||||    
T  54936278 tgccttaaggttttgggtaagagtgtggtgtctctctcactatgtggttgttctagcctcgatgtggacagtcccccga-gctcccccagtgacccaaca 54936376  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 1731621 - 1731581
Alignment:
Q  47 ggttgttctagcctcgatgtggatggtccccctaggctcccc 88  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  1731621 ggttattctagcctcgatgtggatggtccccc-aggctcccc 1731581  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 10246002 - 10246078
Alignment:
Q  4 gccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    |||||||||| || ||||||| ||||| ||||| |   ||||| |||||||||||||||||||||||| | ||||||    
T  10246002 gccttaaggttttgggtaagagtgtggtgtctcccttgcttgtctggttgttctagcctcgatgtggacgctccccc 10246078  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 32941197 - 32941129
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtgga 69  Q
    ||||||||||| || ||||||| |||| ||||||||   |||||  |||||||||||||||||||||||    
T  32941197 tgccttaaggttttgggtaagagtgtgacgtctctcttgcttgtgcggttgttctagcctcgatgtgga 32941129  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 43174255 - 43174300
Alignment:
Q  33 tctctcacttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    |||||||||||| ||||||||| ||||| |||||||| ||||||||    
T  43174255 tctctcacttgtgtggttgttcaagccttgatgtggacggtccccc 43174300  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 50459806 - 50459878
Alignment:
Q  6 cttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccc 76  Q
    |||||||| ||||||||||  |||| |||||||   ||||| |||||||||||||||||||||| | ||||||    
T  50459806 cttaaggttttaggtaagagcgtggtgtctctcttgcttgtgtggttgttctagcctcgatgtgcacggtccc 50459878  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 1731721 - 1731646
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccc 76  Q
    ||||||||||| || ||||||| ||||| || ||||   ||||| |||||||||||||||| ||||||| ||||||    
T  1731721 tgccttaaggttttgggtaagagtgtggtgtttctcttgcttgtgtggttgttctagcctcaatgtggacggtccc 1731646  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 20695925 - 20695957
Alignment:
Q  46 tggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||| |||||||||||||||||||||||    
T  20695925 tggttgttcaagcctcgatgtggatggtccccc 20695957  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 23817484 - 23817431
Alignment:
Q  46 tggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaaca 101  Q
    |||||||||||||||||||||||| ||| |||  |||||||||  |||||||||||    
T  23817484 tggttgttctagcctcgatgtggacggttccc--aggctcccccagtgacccaaca 23817431  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 41370484 - 41370516
Alignment:
Q  46 tggttgttctagcctcgatgtggatggtccccc 78  Q
    |||||||||||||||||||||||| ||||||||    
T  41370484 tggttgttctagcctcgatgtggacggtccccc 41370516  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 66162 - 66100
Alignment:
Q  4 gccttaaggtgttaggtaagattgtggcgtctctcacttgtatggttgttctagcctcgatgt 66  Q
    |||||||||| || ||||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  66162 gccttaaggttttgggtaagagtgtggcgcctctcacttgtatggttgttctggcctcgatgt 66100  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 32168774 - 32168673
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    |||||| |||| || ||||||| |||||||||||||   |||||  |||||||||||||||||||||||  ||||||  |||||||||| ||||||||||    
T  32168774 tgccttgaggttttgggtaagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtggacagtcccctaaggctcccctagtgacccaac 32168675  T
Q  101 aa 102  Q
    ||    
T  32168674 aa 32168673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 22077570 - 22077472
Alignment:
Q  4 gccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaaca 101  Q
    |||||||||| || ||||||| |||||||||||||  |||| |  |||||||| ||| ||||| |||| |||||||| ||||||||||||||||||||||    
T  22077570 gccttaaggttttgggtaagagtgtggcgtctctctcacttatgcggttgttcaagcatcgatatggacggtccccc-aggctccccttgtgacccaaca 22077472  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 3875407 - 3875333
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtcc 75  Q
    ||||||||||| |||||||||| ||||| |||||||  ||| || |||||||||||||||||||||||| |||||    
T  3875407 tgccttaaggttttaggtaagaatgtggagtctctctcactagtgtggttgttctagcctcgatgtggacggtcc 3875333  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 34649520 - 34649620
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    ||||||||||| || ||||||| || ||||||||||   || || |||||||||||||||||||||||| ||||||||   ||| |||| ||||||||||    
T  34649520 tgccttaaggttttgggtaagagtgaggcgtctctcttgctagtgtggttgttctagcctcgatgtggacggtcccccggagcttccctagtgacccaac 34649619  T
Q  101 a 101  Q
    |    
T  34649620 a 34649620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 41157112 - 41157176
Alignment:
Q  40 cttgtatggttgttctagcctcgatgtggatggtccccctaggctcccctt--gtgacccaacaa 102  Q
    ||||| |||||||||||||||||||||||  |||||||| |||||||||||  ||||||||||||    
T  41157112 cttgtgtggttgttctagcctcgatgtgggcggtcccccaaggctccccttcagtgacccaacaa 41157176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 41142454 - 41142532
Alignment:
Q  3 tgccttaaggtgttaggtaa-gattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| || ||||| || |||||||||||||   ||||| |||||||||||||||||||||||| ||||||||    
T  41142454 tgccttaaggtttttggtaaagagtgtggcgtctctcttgcttgtgtggttgttctagcctcgatgtggacggtccccc 41142532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 3537672 - 3537599
Alignment:
Q  6 cttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtcccc 77  Q
    |||||||| || ||||||| |||||||||||||   |||||  ||||||||||||||||||||||| |||||||    
T  3537672 cttaaggttttgggtaagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtcccc 3537599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 22077890 - 22077806
Alignment:
Q  18 ggtaagattgtggcgtctct--cacttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaaca 101  Q
    ||||||| ||||||||||||  ||||| |  |||||||| ||| |||||||||| ||||| || ||||||||||||||||||||||    
T  22077890 ggtaagagtgtggcgtctctttcacttatgcggttgttcaagcatcgatgtggacggtcctcc-aggctccccttgtgacccaaca 22077806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 44290495 - 44290434
Alignment:
Q  40 cttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaacaa 102  Q
    |||||| ||||||||||||||||||||||| |||||||| | |||||||  ||||||||||||    
T  44290495 cttgtacggttgttctagcctcgatgtggacggtcccccga-gctcccccagtgacccaacaa 44290434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 50051718 - 50051665
Alignment:
Q  48 gttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaacaa 102  Q
    ||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||    
T  50051718 gttgttctagcatcgatgtggacggtcccccta-gctcccctcgtgacccaacaa 50051665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 26661598 - 26661499
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcg--tctctcacttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaac 100  Q
    ||||||||||| || ||||||| ||||| |  |||||| ||||| ||||||||| ||||||||| |||| ||||||||||  ||| ||| ||||||||||    
T  26661598 tgccttaaggttttgggtaagagtgtggtgtctctctcgcttgtgtggttgttcaagcctcgatatggacggtcccccta-actctcctcgtgacccaac 26661500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 26661974 - 26661877
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaa 99  Q
    ||||||||||| || ||||||| ||||| |||||||   ||||| ||||||||| | ||| |||| |||||||| ||||| |||||||| |||||||||    
T  26661974 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttgtgtggttgttcaatccttgatgcggatggtctcccta-gctcccctcgtgacccaa 26661877  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 14318949 - 14319026
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| || ||||||| ||||| |||||||  | ||||  ||||||||||||||| ||||||| ||||||||    
T  14318949 tgccttaaggttttgggtaagagtgtggtgtctctcttatttgtgcggttgttctagcctcaatgtggacggtccccc 14319026  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 31767237 - 31767160
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    ||||||||||| || ||||||| |||| ||||| ||   ||||| |||||||||||| ||||||||||| ||||||||    
T  31767237 tgccttaaggttttgggtaagagtgtgacgtctatcttgcttgtgtggttgttctagactcgatgtggacggtccccc 31767160  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 41157496 - 41157546
Alignment:
Q  40 cttgtatggttgttctagcctcgatgtggatggtccccctaggctcccctt 90  Q
    ||||| |||||||||||||||||||||||  |||||| | |||||||||||    
T  41157496 cttgtgtggttgttctagcctcgatgtgggcggtccctcaaggctcccctt 41157546  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 48588564 - 48588491
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctc--acttgtatggttgttctagcctcgatgtggatggtc 74  Q
    ||||||||||| || ||||||| || || |||||||  ||||||  ||||||||||||||||||||||| ||||    
T  48588564 tgccttaaggttttgggtaagagtgcggtgtctctcttacttgtgcggttgttctagcctcgatgtggacggtc 48588491  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 41759565 - 41759641
Alignment:
Q  3 tgccttaaggtgttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtcccc 77  Q
    ||||||||||| || ||||||| ||||| |||||||   ||| | ||||||||||||||| |||||||| |||||||    
T  41759565 tgccttaaggttttgggtaagagtgtggtgtctctcttgcttatgtggttgttctagccttgatgtggacggtcccc 41759641  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 24600358 - 24600322
Alignment:
Q  33 tctctcacttgtatggttgttctagcctcgatgtgga 69  Q
    |||||| || |||||||||||||||||||||||||||    
T  24600358 tctctcgctagtatggttgttctagcctcgatgtgga 24600322  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 37850644 - 37850600
Alignment:
Q  33 tctctcacttgtatggttgttctagcctcgatgtggatggtcccc 77  Q
    ||||||||||||  ||||| ||||||||||||||||| |||||||    
T  37850644 tctctcacttgtgcggttgctctagcctcgatgtggacggtcccc 37850600  T

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Target: scaffold0391 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 1714 - 1660
Alignment:
Q  46 tggttgttctagcctcgatgtggatggtccccctaggctccccttgtgacccaaca 101  Q
    |||||||||||||||||||||||   ||||||||| |||||||| |||||||||||    
T  1714 tggttgttctagcctcgatgtgggcagtcccccta-gctcccctcgtgacccaaca 1660  T

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Target: scaffold0702 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 211 - 146
Alignment:
Q  15 ttaggtaagattgtggcgtctctca--cttgtatggttgttctagcctcgatgtggatggtccccc 78  Q
    |||||||||| ||||| |||||||   ||||  |||||||||||||||||||||||| ||||||||    
T  211 ttaggtaagaatgtggtgtctctcttgcttgagtggttgttctagcctcgatgtggacggtccccc 146  T

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