View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8222_low_21 (Length: 240)

Name: NF8222_low_21
Description: NF8222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8222_low_21
NF8222_low_21
[»] chr5 (2 HSPs)
chr5 (16-240)||(9606211-9606435)
chr5 (16-239)||(9590566-9590787)
[»] chr8 (15 HSPs)
chr8 (16-240)||(6449581-6449805)
chr8 (16-240)||(6456048-6456272)
chr8 (87-179)||(6262205-6262297)
chr8 (93-181)||(7457950-7458038)
chr8 (93-181)||(7470352-7470440)
chr8 (94-175)||(6273421-6273502)
chr8 (93-173)||(6351209-6351289)
chr8 (93-175)||(6287671-6287753)
chr8 (109-175)||(6362110-6362176)
chr8 (94-175)||(6330762-6330843)
chr8 (94-175)||(6368870-6368951)
chr8 (124-175)||(6389882-6389933)
chr8 (94-173)||(6423127-6423206)
chr8 (94-175)||(6320300-6320381)
chr8 (121-164)||(6409128-6409171)
[»] chr2 (2 HSPs)
chr2 (94-176)||(42689628-42689710)
chr2 (94-175)||(42692138-42692219)
[»] chr7 (2 HSPs)
chr7 (112-173)||(46709173-46709234)
chr7 (119-173)||(46708215-46708269)
[»] chr1 (1 HSPs)
chr1 (112-181)||(47126861-47126930)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 9606435 - 9606211
Alignment:
Q  16 aaatatgccttttgagggtttttcaccatctcatcataattcggagttcctttctccgggatccatcttcgactaagtgttggacggtttagaatataac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9606435 aaatatgccttttgagggtttttcaccatctcatcataattcggagttcctttctccgggatccatcttcgactaagtgttggacggtttagaatataac 9606336  T
Q  116 ctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgataatggaacatgattggattaaatcttgaatattttgcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9606335 ctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgataatggaacatgattggattaaatcttgaatattttgcat 9606236  T
Q  216 cttaggccaccatggcttgtctttc 240  Q
    |||||||||||||||||||||||||    
T  9606235 cttaggccaccatggcttgtctttc 9606211  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 9590787 - 9590566
Alignment:
Q  16 aaatatgccttttgagggtttttcaccatctcatcataattcggagttcctttctccgggatccatcttcgactaagtgttggacggtttagaatataac 115  Q
    ||||||| |||||| || ||||||||||| || ||||| |   ||||||||||||| || |||||||||  || || | ||||||||||||| ||| |||    
T  9590787 aaatatggcttttggggatttttcaccatttcttcatattcaagagttcctttctctggtatccatcttttaccaactattggacggtttaggataaaac 9590688  T
Q  116 ctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgataatggaacatgattggattaaatcttgaatattttgcat 215  Q
     ||  ||||||||||||||||| |||||||| ||||||||||||| || |||||||||||||||||| || ||||| || |  ||||||| | |||||||    
T  9590687 atc--taaggatattgtccaaagttaacagcagcatgaagagcaggagtagtccatatgataatggaccaagattgaatcaggtcttgaagagtttgcat 9590590  T
Q  216 cttaggccaccatggcttgtcttt 239  Q
      ||||||||||| ||||||||||    
T  9590589 gctaggccaccattgcttgtcttt 9590566  T

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Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 6449581 - 6449805
Alignment:
Q  16 aaatatgccttttgagggtttttcaccatctcatcataattcggagttcctttctccgggatccatcttcgactaagtgttggacggtttagaatataac 115  Q
    ||||| |||||||||||  |||||||||||||||| || | ||||||||||  |||||| ||  |||||| ||||| |||||||||||| || ||||| |    
T  6449581 aaatacgccttttgaggacttttcaccatctcatcgtattccggagttcctggctccggaataaatcttctactaattgttggacggttcaggatatatc 6449680  T
Q  116 ctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgataatggaacatgattggattaaatcttgaatattttgcat 215  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |  || ||||||| | |||||||    
T  6449681 ctccgtaaggatattgtccgaaattaacagctgcatgaagagcagaagcagtccatataataatggagcaagattgaaccaagtcttgaacagtttgcat 6449780  T
Q  216 cttaggccaccatggcttgtctttc 240  Q
    |||||||||||||||||||||||||    
T  6449781 cttaggccaccatggcttgtctttc 6449805  T

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Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 6456048 - 6456272
Alignment:
Q  16 aaatatgccttttgagggtttttcaccatctcatcataattcggagttcctttctccgggatccatcttcgactaagtgttggacggtttagaatataac 115  Q
    ||||| |||||||||||  ||||||||||||||||||| | ||||||||||| |||||| ||  |||||| |||||| ||||||||||| || ||||| |    
T  6456048 aaatacgccttttgaggacttttcaccatctcatcatactccggagttccttgctccggaataaatcttctactaagagttggacggttcaggatatatc 6456147  T
Q  116 ctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgataatggaacatgattggattaaatcttgaatattttgcat 215  Q
    ||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||| || ||||| |  || |||  || | |||||||    
T  6456148 ctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataatggagcaagattgaaccaagtctccaacagtttgcat 6456247  T
Q  216 cttaggccaccatggcttgtctttc 240  Q
    |||||||||||||||||||||||||    
T  6456248 cttaggccaccatggcttgtctttc 6456272  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 6262205 - 6262297
Alignment:
Q  87 actaagtgttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgataat 179  Q
    |||||| |||||||||||||  ||  |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6262205 actaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccatatgataat 6262297  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 7457950 - 7458038
Alignment:
Q  93 tgttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgataatgg 181  Q
    |||||| ||||| || ||||| |||||||| | |||||||||||||||||||||||||||||| || |||||| ||||||||| |||||    
T  7457950 tgttggtcggttaaggatatatcctccatacgcatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagaatgg 7458038  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 7470352 - 7470440
Alignment:
Q  93 tgttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgataatgg 181  Q
    |||||| ||||| || ||||| |||||||| | |||||||||||||||||||||||||||||| || |||||| ||||||||| |||||    
T  7470352 tgttggtcggttaaggatatatcctccatacgcatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagaatgg 7470440  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 6273421 - 6273502
Alignment:
Q  94 gttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatga 175  Q
    ||||| ||||| ||||| ||||| || || |||||||||||||||||||||||||||||||| || |||||| |||||||||    
T  6273421 gttggtcggttaagaatgtaaccaccgtacggatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 6273502  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 6351209 - 6351289
Alignment:
Q  93 tgttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatat 173  Q
    |||||| ||||| || ||||| |||||||| ||||||||||| |||||||||||||||||||| || |||||| |||||||    
T  6351209 tgttggccggttaaggatatatcctccatatggatattgtccgaaattaacagctgcatgaagtgctgaagcaatccatat 6351289  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 6287671 - 6287753
Alignment:
Q  93 tgttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatga 175  Q
    |||||| ||||| ||||| ||||| || || ||||||||||||||||||||||| |||||||| || |||||| |||||||||    
T  6287671 tgttggtcggttaagaatgtaaccaccgtacggatattgtccaaaattaacagccgcatgaagtgccgaagcaatccatatga 6287753  T

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Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 6362110 - 6362176
Alignment:
Q  109 atataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatga 175  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||| || |||||| |||||||||    
T  6362110 atatatcctccatacggatattgtccaaaattaactgctgcatgaagtgctgaagcaatccatatga 6362176  T

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Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 6330762 - 6330843
Alignment:
Q  94 gttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatga 175  Q
    ||||| ||||| || ||||| |||||||| |||||||| ||||||||||||||||||||| | || |||||| |||||||||    
T  6330762 gttggtcggttaagtatatatcctccatatggatattgaccaaaattaacagctgcatgatgtgctgaagcaatccatatga 6330843  T

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Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 6368870 - 6368951
Alignment:
Q  94 gttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatga 175  Q
    ||||| ||||| || || || ||||||||  ||||||||||||||||||||||||||||||| || |||||| |||||||||    
T  6368870 gttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 6368951  T

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Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 6389882 - 6389933
Alignment:
Q  124 ggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatga 175  Q
    |||||||||||||||||||||||||||||||| || |||||| |||||||||    
T  6389882 ggatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 6389933  T

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Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 6423127 - 6423206
Alignment:
Q  94 gttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatat 173  Q
    ||||| ||||| || || || |||||||| || ||||||||||||||||||||||||||||| || |||||| |||||||    
T  6423127 gttggtcggttaaggatgtatcctccatatgggtattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 6423206  T

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Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 6320300 - 6320381
Alignment:
Q  94 gttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatga 175  Q
    ||||| ||||| || ||||| |||||||| || ||||| ||||||||||||||||||||| | || |||||| |||||||||    
T  6320300 gttggtcggttaagtatatatcctccatatgggtattgaccaaaattaacagctgcatgatgtgctgaagcaatccatatga 6320381  T

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Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 6409128 - 6409171
Alignment:
Q  121 taaggatattgtccaaaattaacagctgcatgaagagcagaagc 164  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  6409128 taaggatattgtccaaaattaacagctgcatgaagtgctgaagc 6409171  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 42689710 - 42689628
Alignment:
Q  94 gttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgat 176  Q
    ||||| |||||||||||| |||| || ||||||||||||||||||||||||||||| || || || ||||| |||||||||||    
T  42689710 gttgggcggtttagaataaaaccgccgtaaggatattgtccaaaattaacagctgcgtggagggctgaagccgtccatatgat 42689628  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 42692138 - 42692219
Alignment:
Q  94 gttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatga 175  Q
    |||||||||||||  ||  ||||||| || | ||| ||||||||||||||||||||||||||||| |||||| |||||||||    
T  42692138 gttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcatgaagagctgaagcaatccatatga 42692219  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 46709173 - 46709234
Alignment:
Q  112 taacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatat 173  Q
    |||||| || |||||||||||||||| || ||||||||||| ||||| |||||| |||||||    
T  46709173 taacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 46709234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 46708215 - 46708269
Alignment:
Q  119 cataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatat 173  Q
    ||||||||||||||||||| || ||||||||||| || || |||||| |||||||    
T  46708215 cataaggatattgtccaaattttacagctgcatgtagggctgaagcaatccatat 46708269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 47126861 - 47126930
Alignment:
Q  112 taacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgataatgg 181  Q
    |||||| ||||||| ||||||||||| || ||||||||||||| |||||||||   |||||| |||||||    
T  47126861 taacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatataataatgg 47126930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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