View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8222_low_4 (Length: 407)
Name: NF8222_low_4
Description: NF8222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8222_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 28903524 - 28903333
Alignment:
| Q |
18 |
gaaaatgcttctatggtgctgaatttgctcttgtcaaaggcaacaaaggattttgtaggcactgctcaaaacttgcctttctaattgagataaatgctga |
117 |
Q |
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| T |
28903524 |
gaaaatgcttctatggtgctgaatttgctcttgtcaaaggaaacaaaggattttgtaggcactgctcaaaacttgcctttctaattgagaaaaatgctga |
28903425 |
T |
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| Q |
118 |
cgtagattctgatggggtaagatatattttttaatcacgccttatattatgtgcagcaaaagaaagaaaaagaacctgcaacagcatgtgga |
209 |
Q |
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| T |
28903424 |
cgtagattctgatggggtaagattttttttttaatcacgccttatattatgtgcagcaaaagaaagaaaaagaacctgcaacagcatgtgga |
28903333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 275 - 397
Target Start/End: Complemental strand, 28903267 - 28903145
Alignment:
| Q |
275 |
ggaacaaattgccaatatttgtgggtagagtttccacctaaaactatacatgctagttatgctaggcctataagtaacacaggcactggttctctgtgtt |
374 |
Q |
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| T |
28903267 |
ggaacgaattgccaatatttgtgggtagagtttccacctaaaactatacatgctagttatgctagggctataagtaacacaggcactggttctttgtgtt |
28903168 |
T |
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| Q |
375 |
tgtttttgttactttggtctctg |
397 |
Q |
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| T |
28903167 |
tgtttttgttactttggtctctg |
28903145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 28893521 - 28893357
Alignment:
| Q |
17 |
agaaaatgcttctatggtgctgaatttgctcttgtcaaaggcaacaaaggattttgtaggcactgctcaaaacttgcctttctaattgagataaatgctg |
116 |
Q |
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| T |
28893521 |
agaaaatgcttccatggtgctgaatttgctcttgtcaaaagaaacagaggattttgtaggcactgctcaaaacttgcctatttaattgagaaaaatgttg |
28893422 |
T |
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| Q |
117 |
acgtagattctgatggggtaagatatattttttaatcacgccttatattatgtgcagcaaaagaa |
181 |
Q |
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| T |
28893421 |
atgtcgattctgatggggtaagatattttttcatatcatgcattatattatgtgcagaaaaagaa |
28893357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 28926553 - 28926393
Alignment:
| Q |
22 |
atgcttctatggtgctgaatttgctcttgtcaaaggcaacaaaggattttgtaggcactgctcaaaacttgcctttctaattgagataaatgctgacgta |
121 |
Q |
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| T |
28926553 |
atgcttctatgatgctgaatttgccactgtcaaaagaaacaaaggattttgtaggcactgctcaaaacttgcatttctaattgagacaaatgctgatgtt |
28926454 |
T |
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| Q |
122 |
gattctgatggggtaagatatattttttaatcacgccttatattatgtgcagcaaaagaaa |
182 |
Q |
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| T |
28926453 |
gattctgatggggtgagatgtttttttcaatcatgccttatattatgtccagcaaaagaaa |
28926393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 28917294 - 28917146
Alignment:
| Q |
18 |
gaaaatgcttctatggtgctgaatttgctcttgtcaaaggcaacaaaggattttgtaggcactgctcaaaacttgcctttctaattgagataaatgctga |
117 |
Q |
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| T |
28917294 |
gaaaatgcttctatgatgctgaatttgctactgtcaaaacaaccaaaggattttgtaggcactgctcaaaacttgcatttctaattgagacaaatgctga |
28917195 |
T |
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| Q |
118 |
cgtagattctgatggggtaagatatattttttaatcacgccttatatta |
166 |
Q |
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| T |
28917194 |
cattgattctgatggggttagatatttgtttcaatcatgccttgtatta |
28917146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 32 - 209
Target Start/End: Complemental strand, 28936746 - 28936568
Alignment:
| Q |
32 |
ggtgctgaatttgctcttgtcaaaggcaacaaaggattttgtaggcactgctcaaaacttgcctttctaattgagataaatgctgacgtagattctgatg |
131 |
Q |
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| T |
28936746 |
ggtgctgtatttgctaatgtcaaacgaaacaaaggattttgtgggcactgctcaaaacttgcatttctaattgaggaaaatgctgaggttgattctgatg |
28936647 |
T |
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| Q |
132 |
gggtaagatatattttttaatcacgccttatattatgtgcagcaaaagaaagaaaaaga-acctgcaacagcatgtgga |
209 |
Q |
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| T |
28936646 |
gggtaagatattcctttcaaacatgtcttttgttttgtgcagcaaaagaaagaaacagatacctgcaacagtatgtgga |
28936568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 356
Target Start/End: Complemental strand, 28936498 - 28936420
Alignment:
| Q |
278 |
acaaattgccaatatttgtgggtagagtttccacctaaaactatacatgctagttatgctaggcctataagtaacacag |
356 |
Q |
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| T |
28936498 |
acaaattgccaatgtttattgttagagtttccaaataaaactatacacaattgttatgctaggactataaataacacag |
28936420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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