View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8222_low_5 (Length: 392)
Name: NF8222_low_5
Description: NF8222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8222_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 46583981 - 46584352
Alignment:
| Q |
1 |
atgaacaaaactacaatgcaaaaagccacggatcgctaacgtgacacaatcttcaccgtccgatcaaacctgagattcaaacgcgataacaaacaattga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46583981 |
atgaacaaaactacaatgcaaaaagccacggatcgctaacgtgacacaatcttcaccgtccggtcaaacctgagattcaaacgcgataacaaacaattga |
46584080 |
T |
|
| Q |
101 |
catttcaatcagtatttaacacctctcgcgccttcacaatcttttttcacacttcatccaaattccaatttcgcatttctattttactcattccctccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46584081 |
catttcaatcagtatttaacacctctcgcgccttcacaatcttttttcacacttcatccaaattccaatttcgcatttctattttactcattccctccat |
46584180 |
T |
|
| Q |
201 |
tttcggatcgcnnnnnnngaagaaacaatggattccactaccaccacaacaaccacaaccaccaaaggtgccggtggaagaaaaggcggcgaaaggaaga |
300 |
Q |
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||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46584181 |
tttcggatcacaaaaaaagaagaaacaatggattccaccaccaccacaacaaccacaaccaccaaaggtgccggtggaagaaaaggcggcgaaaggaaga |
46584280 |
T |
|
| Q |
301 |
aagccgtttcaaaatcctccaaagccggtcttcaattccccgttggtcgtatcgctaggttcatgaagaaag |
372 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46584281 |
aagccgtttcaaaatcctccaaagccggtctccaattccccgttggtcgtatcgctaggttcatgaagaaag |
46584352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 346
Target Start/End: Complemental strand, 44072111 - 44072064
Alignment:
| Q |
299 |
gaaagccgtttcaaaatcctccaaagccggtcttcaattccccgttgg |
346 |
Q |
| |
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| T |
44072111 |
gaaatccgtttcaagatcttcaaaagccggtcttcaattccccgttgg |
44072064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 248 - 372
Target Start/End: Original strand, 630264 - 630388
Alignment:
| Q |
248 |
aacaaccacaaccaccaaaggtgccggtggaagaaaaggcggcgaaaggaagaaagccgtttcaaaatcctccaaagccggtcttcaattccccgttggt |
347 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||| || ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |
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| T |
630264 |
aacaaccacaaccaccaaaggtgtcggtggaataaaaggcggcaaagggaagaaagccgtttcaaagtcctccaaagtcggtcttcaattccccattggt |
630363 |
T |
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| Q |
348 |
cgtatcgctaggttcatgaagaaag |
372 |
Q |
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|||||||| |||||||||||||||| |
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| T |
630364 |
cgtatcgcgaggttcatgaagaaag |
630388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 34622378 - 34622414
Alignment:
| Q |
320 |
caaagccggtcttcaattccccgttggtcgtatcgct |
356 |
Q |
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|||||| |||||||||||||||||||| ||||||||| |
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| T |
34622378 |
caaagctggtcttcaattccccgttggccgtatcgct |
34622414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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