View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8222_low_6 (Length: 377)

Name: NF8222_low_6
Description: NF8222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8222_low_6
NF8222_low_6
[»] chr8 (13 HSPs)
chr8 (1-227)||(28444669-28444891)
chr8 (277-357)||(28444568-28444649)
chr8 (1-123)||(25019620-25019741)
chr8 (77-148)||(12525139-12525203)
chr8 (175-223)||(3346102-3346150)
chr8 (34-105)||(13544120-13544191)
chr8 (34-105)||(13680282-13680353)
chr8 (6-105)||(13895970-13896068)
chr8 (184-223)||(29861519-29861558)
chr8 (177-224)||(35764754-35764801)
chr8 (184-225)||(33583891-33583932)
chr8 (60-109)||(37740625-37740674)
chr8 (77-109)||(43408582-43408614)
[»] chr1 (30 HSPs)
chr1 (1-148)||(32359143-32359289)
chr1 (1-148)||(32602760-32602906)
chr1 (4-146)||(37131476-37131617)
chr1 (77-148)||(20004013-20004084)
chr1 (77-148)||(31117698-31117769)
chr1 (3-122)||(22593635-22593754)
chr1 (45-147)||(35272588-35272689)
chr1 (1-109)||(7274607-7274714)
chr1 (177-224)||(32348435-32348482)
chr1 (8-109)||(20791973-20792072)
chr1 (184-225)||(38321963-38322004)
chr1 (100-144)||(20791924-20791968)
chr1 (77-108)||(15942491-15942522)
chr1 (181-224)||(32359352-32359395)
chr1 (39-109)||(1415734-1415804)
chr1 (76-118)||(2061026-2061068)
chr1 (77-111)||(11337363-11337397)
chr1 (77-111)||(11495382-11495416)
chr1 (177-227)||(35272475-35272525)
chr1 (179-225)||(42747725-42747771)
chr1 (177-210)||(30173403-30173436)
chr1 (77-130)||(38322100-38322153)
chr1 (184-235)||(2060890-2060942)
chr1 (61-117)||(5046947-5047003)
chr1 (77-109)||(10518266-10518298)
chr1 (177-225)||(21516498-21516546)
chr1 (108-148)||(21516608-21516648)
chr1 (5-109)||(21516662-21516765)
chr1 (77-109)||(35926675-35926707)
chr1 (77-121)||(46315629-46315673)
[»] chr4 (22 HSPs)
chr4 (1-148)||(24418208-24418354)
chr4 (1-148)||(52831416-52831562)
chr4 (1-114)||(24474063-24474175)
chr4 (81-148)||(47789472-47789539)
chr4 (77-148)||(20988783-20988854)
chr4 (1-109)||(17425686-17425793)
chr4 (16-105)||(2733399-2733486)
chr4 (160-226)||(52327448-52327514)
chr4 (177-222)||(27611812-27611857)
chr4 (80-133)||(41963369-41963422)
chr4 (77-109)||(3535204-3535236)
chr4 (77-109)||(21501653-21501685)
chr4 (36-148)||(31736112-31736223)
chr4 (178-225)||(30070324-30070371)
chr4 (34-109)||(52986481-52986556)
chr4 (80-141)||(20435465-20435533)
chr4 (5-99)||(23051682-23051775)
chr4 (77-111)||(39276391-39276425)
chr4 (177-226)||(47789359-47789408)
chr4 (77-134)||(52327338-52327395)
chr4 (82-134)||(41758558-41758610)
chr4 (77-109)||(44555714-44555746)
[»] chr3 (19 HSPs)
chr3 (1-148)||(32645707-32645852)
chr3 (1-148)||(43822489-43822642)
chr3 (1-148)||(37334456-37334602)
chr3 (77-148)||(32326116-32326187)
chr3 (1-109)||(37083808-37083915)
chr3 (42-109)||(32109516-32109583)
chr3 (77-148)||(32582490-32582561)
chr3 (39-109)||(9198196-9198266)
chr3 (60-148)||(33674501-33674588)
chr3 (77-109)||(38684773-38684805)
chr3 (45-148)||(44539130-44539240)
chr3 (101-148)||(13799991-13800038)
chr3 (77-123)||(32117854-32117900)
chr3 (183-225)||(32325999-32326041)
chr3 (182-224)||(32582628-32582670)
chr3 (77-122)||(20873194-20873239)
chr3 (80-148)||(2948879-2948947)
chr3 (74-106)||(3729751-3729783)
chr3 (183-274)||(9197987-9198079)
[»] scaffold0040 (1 HSPs)
scaffold0040 (5-148)||(49869-50011)
[»] chr5 (19 HSPs)
chr5 (34-148)||(9004814-9004929)
chr5 (42-148)||(1621519-1621625)
chr5 (8-107)||(34639971-34640069)
chr5 (82-136)||(34640078-34640132)
chr5 (77-134)||(16869929-16869986)
chr5 (177-226)||(2942098-2942147)
chr5 (77-109)||(34639821-34639853)
chr5 (178-226)||(34640209-34640257)
chr5 (77-124)||(28363470-28363517)
chr5 (39-109)||(4283098-4283168)
chr5 (43-105)||(6462407-6462469)
chr5 (98-148)||(32882785-32882835)
chr5 (82-119)||(13263442-13263479)
chr5 (178-223)||(31812160-31812205)
chr5 (76-109)||(41892912-41892945)
chr5 (180-224)||(6462239-6462283)
chr5 (77-105)||(11863386-11863414)
chr5 (77-109)||(13838880-13838912)
chr5 (77-109)||(31812093-31812125)
[»] chr7 (10 HSPs)
chr7 (34-148)||(883734-883848)
chr7 (34-148)||(1243063-1243177)
chr7 (182-274)||(2525323-2525416)
chr7 (13-106)||(25659416-25659508)
chr7 (46-120)||(28175581-28175655)
chr7 (177-267)||(28175383-28175481)
chr7 (5-148)||(87254-87395)
chr7 (39-148)||(3836938-3837051)
chr7 (185-225)||(29234852-29234892)
chr7 (81-121)||(42967782-42967822)
[»] chr2 (11 HSPs)
chr2 (1-134)||(40909874-40910006)
chr2 (1-134)||(44984317-44984449)
chr2 (34-109)||(31062937-31063012)
chr2 (43-148)||(42139387-42139491)
chr2 (77-148)||(15804441-15804512)
chr2 (77-141)||(42034452-42034516)
chr2 (77-148)||(21721814-21721885)
chr2 (39-109)||(27679071-27679141)
chr2 (42-99)||(12238594-12238651)
chr2 (184-225)||(15804508-15804549)
chr2 (234-274)||(21722019-21722059)
[»] scaffold0004 (1 HSPs)
scaffold0004 (77-145)||(339000-339068)
[»] chr6 (4 HSPs)
chr6 (34-148)||(1288296-1288411)
chr6 (178-274)||(29052727-29052824)
chr6 (77-119)||(8014698-8014740)
chr6 (80-133)||(27903899-27903952)
[»] scaffold0010 (2 HSPs)
scaffold0010 (160-223)||(166751-166814)
scaffold0010 (39-148)||(166590-166697)


Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 28444891 - 28444669
Alignment:
Q  1 tgattaaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagc 100  Q
    ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||  ||||||||| ||  |||||||||||||||||| |||||||    
T  28444891 tgattaaaaaatacctgtttggtaactctcat-ttttacaagagcttatagcttatttttatgagcttagagagggttttgataagctaatttaagtagc 28444793  T
Q  101 ttatagcttgtcactttttatctccatcttacccctacaatcttaattnnnnnnngtgaatattaattagctaatccaaccgctaattttaccaaacatt 200  Q
    ||||||||| ||||  |||||||||||||||||||| |||||||||||        | ||||||||||||||| | |||| ||||||||| ||||| |||    
T  28444792 ttatagcttatcac--tttatctccatcttacccctgcaatcttaattgaaaaaaat-aatattaattagctacttcaactgctaattttcccaaatatt 28444696  T
Q  201 acaaattcaaacaactagcttatccgt 227  Q
    |||||||||||||||||||||||||||    
T  28444695 acaaattcaaacaactagcttatccgt 28444669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 357
Target Start/End: Complemental strand, 28444649 - 28444568
Alignment:
Q  277 atttctcctgacaaaatcacgttacattcaacttagcgtgtgaaccaatcattcaaaatca-aattgttttcaccccataac 357  Q
    ||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||   || |||||||||||||||    
T  28444649 atttctcctgacaaaattacgttacattcaacttagcctatgaaccaatcattcaaaatcagtttttttttcaccccataac 28444568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 25019741 - 25019620
Alignment:
Q  1 tgattaaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagc 100  Q
    ||||||||||| |  |||||||||||| | || ||||| ||||| ||||| ||| |||  ||||||||| |  || || |||||| ||||||||||||||    
T  25019741 tgattaaaaaatatttgtttggtaactgttat-ttttaaacgagattataacttctttttatgagcttatatgagcttatgataatctaattcaagtagc 25019643  T
Q  101 ttatagcttgtcactttttatct 123  Q
    ||||||||||| |||||||||||    
T  25019642 ttatagcttgtaactttttatct 25019620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 12525203 - 12525139
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    |||||||||| |||||||||||||||||       ||||||||||||| || ||||||||||||||||||||    
T  12525203 ttttgataagttaattcaagtagcttat-------cactttttatctcaattttacccctacaatcttaatt 12525139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 3346150 - 3346102
Alignment:
Q  175 tccaaccgctaattttaccaaacattacaaattcaaacaactagcttat 223  Q
    |||||||| |||||||| || ||||||||||||||| ||||||||||||    
T  3346150 tccaaccgttaattttatcatacattacaaattcaatcaactagcttat 3346102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 13544191 - 13544120
Alignment:
Q  34 ttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttata 105  Q
    ||||||||||| |||||||||||||  ||||| ||| || || || ||||||||||||||||| | ||||||    
T  13544191 ttttacacgagtttatagcttatttgtatgagtttatagtagtttgtgataagctaattcaagaaacttata 13544120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 13680282 - 13680353
Alignment:
Q  34 ttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttata 105  Q
    ||||||||||| |||||||||||||  ||||| ||| || || || ||||||||||||||||| | ||||||    
T  13680282 ttttacacgagtttatagcttatttgtatgagtttatagtagtttgtgataagctaattcaagaaacttata 13680353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 13896068 - 13895970
Alignment:
Q  6 aaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttata 105  Q
    ||||||||| |||||| ||||| |||| | ||| | ||||||||| ||||||| |||||| ||| ||  | |||||||||| ||||||||||| ||||||    
T  13896068 aaaaaagacatgtttgttaactgtcat-tattaaatgagcttataacttattttcatgagtttatagttgtttttgataagttaattcaagtaacttata 13895970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 29861519 - 29861558
Alignment:
Q  184 taattttaccaaacattacaaattcaaacaactagcttat 223  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  29861519 taattttaccaaacactacaaattcaatcaactagcttat 29861558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 35764754 - 35764801
Alignment:
Q  177 caaccgctaattttaccaaacattacaaattcaaacaactagcttatc 224  Q
    |||||||||||||||||||||| | ||||||||| ||||||| |||||    
T  35764754 caaccgctaattttaccaaacactgcaaattcaatcaactagattatc 35764801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 33583932 - 33583891
Alignment:
Q  184 taattttaccaaacattacaaattcaaacaactagcttatcc 225  Q
    ||||||||||||||  ||||||||||| ||||||||||||||    
T  33583932 taattttaccaaacgctacaaattcaatcaactagcttatcc 33583891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 37740625 - 37740674
Alignment:
Q  60 catgagcttacagcaggttttgataagctaattcaagtagcttatagctt 109  Q
    |||||||||| ||| | |||||||| |||||| |||||||||||||||||    
T  37740625 catgagcttatagcggtttttgatatgctaatccaagtagcttatagctt 37740674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 43408582 - 43408614
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagctt 109  Q
    |||||||||||||||||||||||| ||||||||    
T  43408582 ttttgataagctaattcaagtagcatatagctt 43408614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 32359143 - 32359289
Alignment:
Q  1 tgattaaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagc 100  Q
    ||||||||||||| | |||| | |||| |||| ||||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||| |    
T  32359143 tgattaaaaaagatccgtttcgcaactgtcat-ttttacacgagcttatagcttattttcatgagcttacagcgatttttgataagctaattcaagtaac 32359241  T
Q  101 ttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
     ||||||||  ||||||||||||| || ||| ||||||||||||||||    
T  32359242 ctatagcttagcactttttatctcaattttatccctacaatcttaatt 32359289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 32602760 - 32602906
Alignment:
Q  1 tgattaaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggt-tttgataagctaattcaagtag 99  Q
    |||||||||||||  |||||| ||||| ||| ||||||||||||||||||| |||||| |||| | ||| |  |||| |||||||||||||||||| |||    
T  32602760 tgattaaaaaagatttgtttgctaactatca-gttttacacgagcttatagtttattttcatgtgtttataa-aggtatttgataagctaattcaaatag 32602857  T
Q  100 cttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    |||||||||| ||| ||||||||| ||| ||||||||||||||| ||||    
T  32602858 cttatagcttatcaatttttatcttcattttacccctacaatctgaatt 32602906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 37131617 - 37131476
Alignment:
Q  4 ttaaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagctta 103  Q
    |||||||||||| |||||||| || ||||  |  ||||||||||| | ||||||| ||||| |||||| ||| |||||||||||||||||||||||||||    
T  37131617 ttaaaaaagacccgtttggtagctatcataatc-acacgagcttagaccttattttcatgaacttacaacagcttttgataagctaattcaagtagctta 37131519  T
Q  104 tagcttgtcactttttatctccatcttacccctacaatcttaa 146  Q
    |||||| |||||||| | ||  || ||||| ||||||||||||    
T  37131518 tagcttatcacttttcaacttgattttaccactacaatcttaa 37131476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 20004013 - 20004084
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||| || |||| ||| |||||||||||    
T  20004013 ttttgataagctaattcaagtagcttatagcttatcaccttttatctcgattttactcctgcaatcttaatt 20004084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 31117769 - 31117698
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    |||||||||| |||||||||||||||||||| | ||| |||||||||| || ||||||||||||||||||||    
T  31117769 ttttgataagataattcaagtagcttatagcctatcaatttttatctcaattttacccctacaatcttaatt 31117698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 22593754 - 22593635
Alignment:
Q  3 attaaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggtttt-gataagctaattcaagtagct 101  Q
    ||||||||||||| ||||||||||  |||  || | ||||||| | ||||||||||  || |||||| ||||| |||| |||||||||||||||||||||    
T  22593754 attaaaaaagaccagtttggtaaccgtcactttct-cacgagcctgtagcttatttttatcagcttatagcagtttttcgataagctaattcaagtagct 22593656  T
Q  102 tatagcttgtcactttttatc 122  Q
    |||||||| ||| ||||||||    
T  22593655 tatagcttatcattttttatc 22593635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 35272689 - 35272588
Alignment:
Q  45 cttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccctacaatctt 144  Q
    ||||||||||||||  ||||||||| |||  |||||||||||||||||| |||||||||| |||| | || ||||||||| || |||||| | |||||||    
T  35272689 cttatagcttatttttatgagcttatagcttgttttgataagctaattccagtagcttatggcttataac-ttttatctcaattttacccatgcaatctt 35272591  T
Q  145 aat 147  Q
    |||    
T  35272590 aat 35272588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 7274607 - 7274714
Alignment:
Q  1 tgattaaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagc 100  Q
    |||||||||||||| |||||  ||||| |||| ||||| ||||||||||| ||||||| |||||||| | ||  |  | ||||||||||||||||||||     
T  7274607 tgattaaaaaagacttgtttcataactatcat-ttttaaacgagcttataacttattttcatgagctcatagtggcctctgataagctaattcaagtagt 7274705  T
Q  101 ttatagctt 109  Q
    |||||||||    
T  7274706 ttatagctt 7274714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 32348435 - 32348482
Alignment:
Q  177 caaccgctaattttaccaaacattacaaattcaaacaactagcttatc 224  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||    
T  32348435 caaccgctaattttaccaaacactacaaattcaatcaactagcttatc 32348482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 20792072 - 20791973
Alignment:
Q  8 aaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagc 107  Q
    |||||||||||||| ||||| | ||  ||||||||| |||| | |||||||  ||||| | | ||  | |||||||||||||||||||||||||||||||    
T  20792072 aaaagacctgtttgataactgttat--tttacacgaccttacatcttatttttatgagttcatagtggtttttgataagctaattcaagtagcttatagc 20791975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 38322004 - 38321963
Alignment:
Q  184 taattttaccaaacattacaaattcaaacaactagcttatcc 225  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  38322004 taattttaccaaacactacaaattcaaacaactagtttatcc 38321963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 20791968 - 20791924
Alignment:
Q  100 cttatagcttgtcactttttatctccatcttacccctacaatctt 144  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||||    
T  20791968 cttataacttgtcactttttatttccattttacccctacaatctt 20791924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 108
Target Start/End: Complemental strand, 15942522 - 15942491
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagct 108  Q
    ||||||||||||||||||||||||||||||||    
T  15942522 ttttgataagctaattcaagtagcttatagct 15942491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 32359352 - 32359395
Alignment:
Q  181 cgctaattttaccaaacattacaaattcaaacaactagcttatc 224  Q
    |||||||||||||||||||||||||||||| || |||| |||||    
T  32359352 cgctaattttaccaaacattacaaattcaatcagctagtttatc 32359395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 1415734 - 1415804
Alignment:
Q  39 cacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagctt 109  Q
    ||||||||||||||||||||  || |  ||| |||   |||||||||||||||||||||||||| ||||||    
T  1415734 cacgagcttatagcttatttttattaatttatagcgttttttgataagctaattcaagtagcttgtagctt 1415804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 2061068 - 2061026
Alignment:
Q  76 gttttgataagctaattcaagtagcttatagcttgtcactttt 118  Q
    |||||||||||||||||||||||||||| ||||| ||| ||||    
T  2061068 gttttgataagctaattcaagtagcttaaagcttatcattttt 2061026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 11337397 - 11337363
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgt 111  Q
    |||| ||||||||||||||||||||||||||||||    
T  11337397 tttttataagctaattcaagtagcttatagcttgt 11337363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 11495416 - 11495382
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgt 111  Q
    |||| ||||||||||||||||||||||||||||||    
T  11495416 tttttataagctaattcaagtagcttatagcttgt 11495382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 35272525 - 35272475
Alignment:
Q  177 caaccgctaattttaccaaacattacaaattcaaacaactagcttatccgt 227  Q
    |||||| ||||||||| ||||| ||||||||||| || |||||||||||||    
T  35272525 caaccgataattttactaaacactacaaattcaatcagctagcttatccgt 35272475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 42747725 - 42747771
Alignment:
Q  179 accgctaattttaccaaacattacaaattcaaacaactagcttatcc 225  Q
    ||||| |||||||||||||| |||||||||||  |||||||||||||    
T  42747725 accgcaaattttaccaaacactacaaattcaattaactagcttatcc 42747771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 30173436 - 30173403
Alignment:
Q  177 caaccgctaattttaccaaacattacaaattcaa 210  Q
    ||||||||||||||| ||||||||||||||||||    
T  30173436 caaccgctaattttaacaaacattacaaattcaa 30173403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 38322153 - 38322100
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcactttttatctccatctt 130  Q
    ||||||||||| | ||||||||||||||||||| ||| ||||| |||| |||||    
T  38322153 ttttgataagccacttcaagtagcttatagcttatcaatttttttctcaatctt 38322100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 2060942 - 2060890
Alignment:
Q  184 taattttaccaaacattacaaattcaaacaactagcttatccg-tatgagcta 235  Q
    ||||||||||||||| |||||||||||  || ||||||||||| |||||||||    
T  2060942 taattttaccaaacaatacaaattcaactaattagcttatccgctatgagcta 2060890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 5046947 - 5047003
Alignment:
Q  61 atgagcttacagcaggttttgataagctaattcaagtagcttatagcttgtcacttt 117  Q
    ||||| ||| ||||| || |||||| ||| || ||||||||||||||||||||||||    
T  5046947 atgagtttatagcagtttgtgataaactagtttaagtagcttatagcttgtcacttt 5047003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 10518266 - 10518298
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagctt 109  Q
    |||||||||||||||| ||||||||||||||||    
T  10518266 ttttgataagctaatttaagtagcttatagctt 10518298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 21516546 - 21516498
Alignment:
Q  177 caaccgctaattttaccaaacattacaaattcaaacaactagcttatcc 225  Q
    ||||| ||||||||||||||||  |||||||||| || |||||||||||    
T  21516546 caaccactaattttaccaaacacaacaaattcaatcagctagcttatcc 21516498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 21516648 - 21516608
Alignment:
Q  108 ttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    ||||||||| ||||||| || ||||||||||||||||||||    
T  21516648 ttgtcacttcttatctcaattttacccctacaatcttaatt 21516608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 21516765 - 21516662
Alignment:
Q  5 taaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttat 104  Q
    |||||||||| |||||||||| | |||| |||| |||||||||||| |||| ||  ||||||||| |||   ||||  ||||| || ||||||| |||||    
T  21516765 taaaaaagacatgtttggtaattgtcatttttt-cacgagcttataacttaatttgatgagcttatagcgttttttattaagcaaaatcaagtatcttat 21516667  T
Q  105 agctt 109  Q
    |||||    
T  21516666 agctt 21516662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 35926707 - 35926675
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagctt 109  Q
    |||||||||||| ||||||||||||||||||||    
T  35926707 ttttgataagctgattcaagtagcttatagctt 35926675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 46315673 - 46315629
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcactttttat 121  Q
    ||||||||||||| |||||||||||||||||| ||  ||||||||    
T  46315673 ttttgataagctatttcaagtagcttatagctggtagctttttat 46315629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 24418354 - 24418208
Alignment:
Q  1 tgattaaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagc 100  Q
    ||||||||| ||||||||||| ||| | |||| |||||||| |||||||| ||||||| | |||||||| ||| | ||||||||||||||||||||||||    
T  24418354 tgattaaaagagacctgtttgctaattgtcat-ttttacacaagcttatatcttattttcttgagcttatagcggtttttgataagctaattcaagtagc 24418256  T
Q  101 ttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    ||||||||| ||| |||||||||  || |||||||| |||||||||||    
T  24418255 ttatagcttatcattttttatctttattttacccctgcaatcttaatt 24418208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 52831416 - 52831562
Alignment:
Q  1 tgattaaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagc 100  Q
    ||||||||||| || |||||||||||  |||| |||||||||||||| |||||||||| |||||||||| |   | ||||||||||||||||||||||||    
T  52831416 tgattaaaaaaaacttgtttggtaacggtcat-ttttacacgagcttgtagcttattttcatgagcttataaaggtttttgataagctaattcaagtagc 52831514  T
Q  101 ttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    ||||||||| ||| |||||||||| || | |||||| |||||||||||    
T  52831515 ttatagcttatcattttttatctcaatttgacccctgcaatcttaatt 52831562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 24474063 - 24474175
Alignment:
Q  1 tgattaaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagc 100  Q
    |||||||||||||||||||||| || | ||| | ||| |||| ||||||| ||||||| |||||| ||| ||| | |||| |||||||||||||||||||    
T  24474063 tgattaaaaaagacctgtttggcaattatca-gctttgcacgggcttatatcttattttcatgagtttatagcggttttttataagctaattcaagtagc 24474161  T
Q  101 ttatagcttgtcac 114  Q
    ||||||||| ||||    
T  24474162 ttatagcttatcac 24474175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 47789539 - 47789472
Alignment:
Q  81 gataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||| | |||||| |||||||||||    
T  47789539 gataagctaattcaagtagcttatagcttatcactatttatctccatttaacccctgcaatcttaatt 47789472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 20988854 - 20988783
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||| || ||| ||||  ||||||||||    
T  20988854 ttttgataagctaattcaagtagcttatagcttatcattttttatctcaattttaaccctttaatcttaatt 20988783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 17425793 - 17425686
Alignment:
Q  1 tgattaaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagc 100  Q
    ||||||||||| || ||||||||||||  ||| ||| ||||||||||||||| ||||| | |||||||| ||| | | || ||||||||| |||||||||    
T  17425793 tgattaaaaaatacttgtttggtaactgccat-tttaacacgagcttatagcgtattttcttgagcttatagcggttattaataagctaactcaagtagc 17425695  T
Q  101 ttatagctt 109  Q
     ||||||||    
T  17425694 ctatagctt 17425686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 2733486 - 2733399
Alignment:
Q  16 tgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttata 105  Q
    |||||||||| | |||| |||||||| |||||||| |||||||  ||||||||| | ||| |||||||||||||||||||||| ||||||    
T  2733486 tgtttggtaattgtcat-ttttacaccagcttataacttattttaatgagctta-atcagtttttgataagctaattcaagtaacttata 2733399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 52327448 - 52327514
Alignment:
Q  160 atattaattagctaatccaaccgctaattttaccaaacattacaaattcaaacaactagcttatccg 226  Q
    ||||| || ||||| | |||| ||||||||||||||||| ||||||||||| || ||||||||||||    
T  52327448 atatttataagctagttcaactgctaattttaccaaacactacaaattcaaccagctagcttatccg 52327514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 27611857 - 27611812
Alignment:
Q  177 caaccgctaattttaccaaacattacaaattcaaacaactagctta 222  Q
    |||| ||||||||||||||||| ||||||||||| |||||||||||    
T  27611857 caactgctaattttaccaaacactacaaattcaatcaactagctta 27611812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 41963422 - 41963369
Alignment:
Q  80 tgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacc 133  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||| || |||||    
T  41963422 tgataagctaattcaagtaacttatagcttatcactttgtatctcaattttacc 41963369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 3535204 - 3535236
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagctt 109  Q
    |||||||||||||||||||||||||||||||||    
T  3535204 ttttgataagctaattcaagtagcttatagctt 3535236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 21501653 - 21501685
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagctt 109  Q
    |||||||||||||||||||||||||||||||||    
T  21501653 ttttgataagctaattcaagtagcttatagctt 21501685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 31736223 - 31736112
Alignment:
Q  36 ttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccc 135  Q
    |||||| | |||||| ||||||| |||||||||| | |   |||| |||||||||||||||||| ||||||||| | | |||||||||  || ||| |||    
T  31736223 ttacacaaacttataacttattttcatgagcttataacgattttttataagctaattcaagtagtttatagcttataattttttatctaaatttta-ccc 31736125  T
Q  136 tacaatcttaatt 148  Q
    | |||||||||||    
T  31736124 tccaatcttaatt 31736112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 30070324 - 30070371
Alignment:
Q  178 aaccgctaattttaccaaacattacaaattcaaacaactagcttatcc 225  Q
    ||||||||||||||||||||| |||||||||||  | |||||||||||    
T  30070324 aaccgctaattttaccaaacactacaaattcaattagctagcttatcc 30070371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 52986556 - 52986481
Alignment:
Q  34 ttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagctt 109  Q
    ||||||||||| ||||| |||  || |||||| ||| | ||| ||||||||||||| ||||||||| |||||||||    
T  52986556 ttttacacgagtttataactttatttcatgagattataacagtttttgataagctagttcaagtagtttatagctt 52986481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 20435465 - 20435533
Alignment:
Q  80 tgataagctaattcaagtagcttatag-------cttgtcactttttatctccatcttacccctacaat 141  Q
    ||||||||||||| |||||||||||||       |||||||||||||||||| || |||||||||||||    
T  20435465 tgataagctaatttaagtagcttatagtttataacttgtcactttttatctcaattttacccctacaat 20435533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 23051775 - 23051682
Alignment:
Q  5 taaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtag 99  Q
    |||||| |||||||||||||||  |||  || | |||||||||| |||||||||  ||||| ||| ||| | || ||||||||||||||||||||    
T  23051775 taaaaaggacctgtttggtaacagtcactttct-cacgagcttacagcttatttttatgagtttatagcggtttgtgataagctaattcaagtag 23051682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 39276391 - 39276425
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgt 111  Q
    ||||||||||||||||||||||||||| |||||||    
T  39276391 ttttgataagctaattcaagtagcttaaagcttgt 39276425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 47789408 - 47789359
Alignment:
Q  177 caaccgctaattttaccaaacattacaaattcaaacaactagcttatccg 226  Q
    |||||||||||||||||||||| |||||| |||| ||  |||||||||||    
T  47789408 caaccgctaattttaccaaacactacaaaatcaatcagttagcttatccg 47789359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 52327338 - 52327395
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttaccc 134  Q
    ||||||||||||||||||||||||||| ||||| | | ||||| |||| || ||||||    
T  52327338 ttttgataagctaattcaagtagcttaaagcttataattttttctctcaattttaccc 52327395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 41758558 - 41758610
Alignment:
Q  82 ataagctaattcaagtagcttatagcttgtcactttttatctccatcttaccc 134  Q
    |||||||||||||||||||||||||||| ||| ||| | |||| || ||||||    
T  41758558 ataagctaattcaagtagcttatagcttatcattttctctctcaattttaccc 41758610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 44555746 - 44555714
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagctt 109  Q
    ||||||||||||||| |||||||||||||||||    
T  44555746 ttttgataagctaatccaagtagcttatagctt 44555714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 32645707 - 32645852
Alignment:
Q  1 tgattaaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagc 100  Q
    |||||||||||||  ||||| |||| | |||| |||||||||||||||||| ||||||  ||||||||| ||| |||||||||||| ||| |||||||||    
T  32645707 tgattaaaaaagagttgtttagtaattgtcat-ttttacacgagcttatagtttattttaatgagcttatagc-ggttttgataagttaagtcaagtagc 32645804  T
Q  101 ttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    ||| ||||| ||||||||||||||||| ||||| || |||||||||||    
T  32645805 ttaaagcttatcactttttatctccattttaccactccaatcttaatt 32645852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 43822489 - 43822642
Alignment:
Q  1 tgattaaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagt--- 97  Q
    ||||||||||||| | ||||||||| | |||| |||||||| |||||||||||||||| |||||| ||| ||  | |||||||||||||||||||||       
T  43822489 tgattaaaaaagatccgtttggtaattgtcat-ttttacacaagcttatagcttattttcatgagattatagtggtttttgataagctaattcaagtagc 43822587  T
Q  98 ----agcttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
        |||||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  43822588 ttaaagcttatagcttgtcactttttatctccattttacccctgcaatcctaatt 43822642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 37334456 - 37334602
Alignment:
Q  1 tgattaaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagc 100  Q
    ||||||||||||||| ||||| ||||| |||| ||||||||||| |||||||  |||| |||||||||| |   | || | ||||||||| ||| |||||    
T  37334456 tgattaaaaaagaccggtttgataactgtcat-ttttacacgagtttatagcagattttcatgagcttataatggtttattataagctaactcacgtagc 37334554  T
Q  101 ttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    ||||||||| || ||||||||||| || ||| || | |||||||||||    
T  37334555 ttatagcttttcgctttttatctcaattttatccgtgcaatcttaatt 37334602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 32326187 - 32326116
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||| || || |||||||| |||||||||||    
T  32326187 ttttgataagctaattcaagtagcttatagcttatcattatttatatcaattttacccctgcaatcttaatt 32326116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 37083808 - 37083915
Alignment:
Q  1 tgattaaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagc 100  Q
    ||||||||||||||  ||| ||||||| |||  || | ||||||||||||||||||||  |  |||||| ||||  |||| |||||||||||||||||||    
T  37083808 tgattaaaaaagacacgttaggtaactgtcactttct-cacgagcttatagcttatttttactagcttatagcaatttttaataagctaattcaagtagc 37083906  T
Q  101 ttatagctt 109  Q
    |||||||||    
T  37083907 ttatagctt 37083915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 32109516 - 32109583
Alignment:
Q  42 gagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagctt 109  Q
    |||||||||||||||||  |  |||||| ||||  |||||||||||||||||||||||||||||||||    
T  32109516 gagcttatagcttatttttaaaagcttaaagcaatttttgataagctaattcaagtagcttatagctt 32109583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 32582490 - 32582561
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    ||||||||||  | ||||| ||||||||||||| |||||||||||||| || |||||| | |||||||||||    
T  32582490 ttttgataaggcagttcaactagcttatagcttatcactttttatctcaattttacccttgcaatcttaatt 32582561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 9198266 - 9198196
Alignment:
Q  39 cacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagctt 109  Q
    |||||||||| |||||||||  |  |||||| ||| | |||||||||||||||||||||||||| ||||||    
T  9198266 cacgagcttaaagcttatttttactagcttatagcggtttttgataagctaattcaagtagcttttagctt 9198196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 33674588 - 33674501
Alignment:
Q  60 catgagcttacagcaggttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    |||||||||| | ||| ||| |||||||| |||||||||||||||| ||| | | | |||||||| || |||||||||| |||||||||    
T  33674588 catgagcttataacagttttcgataagctgattcaagtagcttataacttat-attatttatctcaattttacccctaccatcttaatt 33674501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 38684805 - 38684773
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagctt 109  Q
    |||||||||||||||||||||||||||||||||    
T  38684805 ttttgataagctaattcaagtagcttatagctt 38684773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 44539130 - 44539240
Alignment:
Q  45 cttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtag-------cttatagcttgtcactttttatctccatcttaccccta 137  Q
    ||||||||||| || ||| |||||| ||  | |||||||||||||||||||||||       |||| ||||| |||||| |||||||||| |||||| |     
T  44539130 cttatagcttactttcataagcttatagtggtttttgataagctaattcaagtagctaataacttaaagcttatcacttcttatctccattttacccttg 44539229  T
Q  138 caatcttaatt 148  Q
    |||||||||||    
T  44539230 caatcttaatt 44539240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 13800038 - 13799991
Alignment:
Q  101 ttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    ||||||||| |||||||||||||| || |||||||| |||||||||||    
T  13800038 ttatagcttatcactttttatctcaattttacccctgcaatcttaatt 13799991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 32117854 - 32117900
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcactttttatct 123  Q
    |||||||||||||||||||||| || ||||||| ||| |||||||||    
T  32117854 ttttgataagctaattcaagtacctgatagcttatcattttttatct 32117900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 32326041 - 32325999
Alignment:
Q  183 ctaattttaccaaacattacaaattcaaacaactagcttatcc 225  Q
    |||||||||||||||| ||||||||| | ||||||||||||||    
T  32326041 ctaattttaccaaacactacaaattccatcaactagcttatcc 32325999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 32582628 - 32582670
Alignment:
Q  182 gctaattttaccaaacattacaaattcaaacaactagcttatc 224  Q
    ||||||||||||||||| ||||||||||| ||||||| |||||    
T  32582628 gctaattttaccaaacactacaaattcaatcaactaggttatc 32582670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 20873239 - 20873194
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcactttttatc 122  Q
    |||||||||||||||||||||| |||||||||| ||| | ||||||    
T  20873239 ttttgataagctaattcaagtaacttatagcttatcattatttatc 20873194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 2948947 - 2948879
Alignment:
Q  80 tgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    ||||||| |||||||||||||||||||||| | | |||||||||  || ||| || | |||||||||||    
T  2948947 tgataagttaattcaagtagcttatagcttattattttttatctaaattttatccttgcaatcttaatt 2948879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 3729751 - 3729783
Alignment:
Q  74 aggttttgataagctaattcaagtagcttatag 106  Q
    ||||||| |||||||||||||||||||||||||    
T  3729751 aggtttttataagctaattcaagtagcttatag 3729783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 274
Target Start/End: Complemental strand, 9198079 - 9197987
Alignment:
Q  183 ctaattttaccaaacattacaaattcaaacaactagcttatccg-tatgagctagcttataagtcacccactataagctagcttatcagctat 274  Q
    |||||||||||||||| |||| |||||| |||||| |||||||| ||| || |||||||| ||  | | | |||||||||| |||| ||||||    
T  9198079 ctaattttaccaaacactacagattcaatcaactaacttatccgctataagttagcttatcagctatctattataagctagtttattagctat 9197987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 50011 - 49869
Alignment:
Q  5 taaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttat 104  Q
    ||||||||||| ||||||||||  |||  || | ||||||||||||||||||||  | ||||||| ||| | || |||||||||||||||||||||||||    
T  50011 taaaaaagacccgtttggtaacggtcactttct-cacgagcttatagcttatttttaagagcttatagcggtttgtgataagctaattcaagtagcttat 49913  T
Q  105 agcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    ||||| |||||||||||||| || |||||| | |||||||||||    
T  49912 agcttatcactttttatctcaattttacccttgcaatcttaatt 49869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 9004814 - 9004929
Alignment:
Q  34 ttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagcttgtcac-tttttatctccatcttac 132  Q
    ||||||||||||||||||||||||| |||||||||| | | | ||||||||||||||||||||||||||||||||  |||| |||||||||| || ||||    
T  9004814 ttttacacgagcttatagcttattttcatgagcttatatcggtttttgataagctaattcaagtagcttatagctaatcacttttttatctcaattttac 9004913  T
Q  133 ccctacaatcttaatt 148  Q
    | || |||||||||||    
T  9004914 ctctgcaatcttaatt 9004929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 1621625 - 1621519
Alignment:
Q  42 gagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccctacaat 141  Q
    |||||||||||||||||  ||| ||||  |||   ||||||||||||||||||||||||||||||||| ||| |||||||||| || |||||| | ||||    
T  1621625 gagcttatagcttatttttatgtgcttttagcgttttttgataagctaattcaagtagcttatagcttatcagtttttatctcaattttacccttgcaat 1621526  T
Q  142 cttaatt 148  Q
    |||||||    
T  1621525 cttaatt 1621519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 34639971 - 34640069
Alignment:
Q  8 aaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagc 107  Q
    |||||||||||||||||||| | |  |||||||| ||||||||||||||||| ||||||||| ||| | || | |||||||||||||||||| |||||||    
T  34639971 aaaagacctgtttggtaactgttaa-ttttacacaagcttatagcttatttctatgagcttatagcggtttataataagctaattcaagtagtttatagc 34640069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 34640078 - 34640132
Alignment:
Q  82 ataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccct 136  Q
    ||||||||||||||||||||||||| || |||||||||||||| || ||||||||    
T  34640078 ataagctaattcaagtagcttatagtttatcactttttatctcaattttacccct 34640132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 16869986 - 16869929
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttaccc 134  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||| || || ||||||    
T  16869986 ttttgataagctaattcaagtagcttatagcttatcattttttatttcaattttaccc 16869929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 2942098 - 2942147
Alignment:
Q  177 caaccgctaattttaccaaacattacaaattcaaacaactagcttatccg 226  Q
    ||||| |||||||||||||||  ||||||||||| |||||||||||||||    
T  2942098 caaccactaattttaccaaaccctacaaattcaaccaactagcttatccg 2942147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 34639821 - 34639853
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagctt 109  Q
    |||||||||||||||||||||||||||||||||    
T  34639821 ttttgataagctaattcaagtagcttatagctt 34639853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 34640209 - 34640257
Alignment:
Q  178 aaccgctaattttaccaaacattacaaattcaaacaactagcttatccg 226  Q
    |||| ||||||||||||||||||||||||||||  | ||||||||||||    
T  34640209 aaccactaattttaccaaacattacaaattcaataagctagcttatccg 34640257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 28363470 - 28363517
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcactttttatctc 124  Q
    |||| ||||||||| |||||||||||||||||| ||| ||||||||||    
T  28363470 tttttataagctaactcaagtagcttatagcttatcattttttatctc 28363517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 4283098 - 4283168
Alignment:
Q  39 cacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagctt 109  Q
    ||||||||||||||||||||  |   ||||| | ||  ||||||||||||||||||| |||||||||||||    
T  4283098 cacgagcttatagcttatttttactggcttataccattttttgataagctaattcaaatagcttatagctt 4283168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 6462469 - 6462407
Alignment:
Q  43 agcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttata 105  Q
    ||||||||||||||||  |  |||||| ||  | |||||||||||||||||||||||||||||    
T  6462469 agcttatagcttatttttactagcttatagtggtttttgataagctaattcaagtagcttata 6462407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 32882785 - 32882835
Alignment:
Q  98 agcttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    |||||| ||||| |||||||||||||| || |||||||| |||||||||||    
T  32882785 agcttacagcttctcactttttatctcaattttacccctgcaatcttaatt 32882835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 13263479 - 13263442
Alignment:
Q  82 ataagctaattcaagtagcttatagcttgtcacttttt 119  Q
    ||||||||||||||||||||||||| || |||||||||    
T  13263479 ataagctaattcaagtagcttatagtttatcacttttt 13263442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 31812160 - 31812205
Alignment:
Q  178 aaccgctaattttaccaaacattacaaattcaaacaactagcttat 223  Q
    ||||| ||||||||||||||| ||||||||||| || |||||||||    
T  31812160 aaccgttaattttaccaaacactacaaattcaatcagctagcttat 31812205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 41892945 - 41892912
Alignment:
Q  76 gttttgataagctaattcaagtagcttatagctt 109  Q
    |||||||||||||||||||||||||||| |||||    
T  41892945 gttttgataagctaattcaagtagcttacagctt 41892912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 6462283 - 6462239
Alignment:
Q  180 ccgctaattttaccaaacattacaaattcaaacaactagcttatc 224  Q
    ||||||||||||| ||||| ||||||||||| || ||||||||||    
T  6462283 ccgctaattttactaaacactacaaattcaatcagctagcttatc 6462239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 105
Target Start/End: Complemental strand, 11863414 - 11863386
Alignment:
Q  77 ttttgataagctaattcaagtagcttata 105  Q
    |||||||||||||||||||||||||||||    
T  11863414 ttttgataagctaattcaagtagcttata 11863386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 13838912 - 13838880
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagctt 109  Q
    ||||||| |||||||||||||||||||||||||    
T  13838912 ttttgattagctaattcaagtagcttatagctt 13838880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 31812093 - 31812125
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagctt 109  Q
    ||||||||||||||||||||||||| |||||||    
T  31812093 ttttgataagctaattcaagtagctcatagctt 31812125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 883734 - 883848
Alignment:
Q  34 ttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacc 133  Q
    ||||||||||||||||| ||||||| ||||||| || || || || ||||||| |||||||||||| |||||| || ||||||||||||||||| |||||    
T  883734 ttttacacgagcttataacttattttcatgagcatatagaagtttctgataagttaattcaagtagtttatagtttatcactttttatctccattttacc 883833  T
Q  134 cctacaatcttaatt 148  Q
    ||| ||||| |||||    
T  883834 cctgcaatcctaatt 883848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 1243063 - 1243177
Alignment:
Q  34 ttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacc 133  Q
    ||||||||||||||||| ||||||| ||||||| || || || || ||||||| |||||||||||| |||||| || ||||||||||||||||| |||||    
T  1243063 ttttacacgagcttataacttattttcatgagcatatagaagtttctgataagttaattcaagtagtttatagtttatcactttttatctccattttacc 1243162  T
Q  134 cctacaatcttaatt 148  Q
    ||| ||||| |||||    
T  1243163 cctgcaatcctaatt 1243177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 274
Target Start/End: Original strand, 2525323 - 2525416
Alignment:
Q  182 gctaattttaccaaacattacaaattcaaacaactagcttatccg-tatgagctagcttataagtcacccactataagctagcttatcagctat 274  Q
    ||||||||||||||||| ||||||||||| || |||||||||||| ||| ||||| ||||||||||| ||||||||  |||||||| |||||||    
T  2525323 gctaattttaccaaacaatacaaattcaatcagctagcttatccgctataagctaacttataagtcatccactatagactagcttagcagctat 2525416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 25659416 - 25659508
Alignment:
Q  13 acctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatag 106  Q
    |||||||||| |||| |||| ||||| || | |||||||||||||| ||||||||||||   | ||| ||||||||||||||||||||||||||    
T  25659416 acctgtttggcaactttcat-ttttagacaaacttatagcttattttcatgagcttacaatggttttcgataagctaattcaagtagcttatag 25659508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 28175655 - 28175581
Alignment:
Q  46 ttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagcttgtcacttttta 120  Q
    |||||||||||||  ||||||||| |||    ||||||||||||| |||||||||||||||||| ||||||||||    
T  28175655 ttatagcttatttttatgagcttatagctttctttgataagctaactcaagtagcttatagcttatcacttttta 28175581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 28175481 - 28175383
Alignment:
Q  177 caaccgctaattttaccaaacattacaaattcaaacaactagcttatccg--------tatgagctagcttataagtcacccactataagctagcttat 267  Q
    |||||||||||| || |||||| ||||||||||  ||||||||| |||||        ||| ||||||||||||||||| || ||||||||||||||||    
T  28175481 caaccgctaattatatcaaacactacaaattcagccaactagctgatccgctatcagctataagctagcttataagtcatccgctataagctagcttat 28175383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 87395 - 87254
Alignment:
Q  5 taaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttat 104  Q
    |||||||||| |||||||||||| |||  |||| || |||||||||| ||||||  |  ||||||  |    ||| |||||||||||||||||||||||     
T  87395 taaaaaagacatgtttggtaactatcacttttttcatgagcttatagtttatttttactagcttagtgtt--tttagataagctaattcaagtagcttaa 87298  T
Q  105 agcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    |||||  || | |||||||| || ||||||||  ||||||||||    
T  87297 agcttaacaatatttatctcaattttacccctctaatcttaatt 87254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 3836938 - 3837051
Alignment:
Q  39 cacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagc----ttatagcttgtcactttttatctccatcttaccc 134  Q
    |||||||||||||||||| | ||||  |||| |||   ||||  ||||||||||||||||||    ||||||||| |  ||||||||||| || ||||||    
T  3836938 cacgagcttatagcttatgttcatgttcttatagcgttttttcctaagctaattcaagtagcttaattatagcttatagctttttatctcaattttaccc 3837037  T
Q  135 ctacaatcttaatt 148  Q
    || |||||| ||||    
T  3837038 ctgcaatctcaatt 3837051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 29234852 - 29234892
Alignment:
Q  185 aattttaccaaacattacaaattcaaacaactagcttatcc 225  Q
    ||||||| |||||| ||||||||||| ||||||||||||||    
T  29234852 aattttatcaaacactacaaattcaatcaactagcttatcc 29234892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 42967782 - 42967822
Alignment:
Q  81 gataagctaattcaagtagcttatagcttgtcactttttat 121  Q
    ||||||||||||||||||||||| ||||| ||||| |||||    
T  42967782 gataagctaattcaagtagcttaaagcttatcactatttat 42967822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 40909874 - 40910006
Alignment:
Q  1 tgattaaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagc 100  Q
    ||||||||||| ||| ||||||||||| |||| |   | || |||||||| ||||||| |||||||||| | |   |||||||||||||||||||||||     
T  40909874 tgattaaaaaataccagtttggtaactgtcatctga-agacaagcttataacttattttcatgagcttataacgttttttgataagctaattcaagtagt 40909972  T
Q  101 ttatagcttgtcactttttatctccatcttaccc 134  Q
    |||||| || |||||||||||||| || ||||||    
T  40909973 ttataggttatcactttttatctcaattttaccc 40910006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 44984449 - 44984317
Alignment:
Q  1 tgattaaaaaagacctgtttggtaactctcatgttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagc 100  Q
    ||||||||||| ||| ||||||||||| |||| |   | || |||||||| ||||||| || ||||||| | |   ||||||||||||||||||||||||    
T  44984449 tgattaaaaaataccagtttggtaactgtcatctga-agacaagcttataacttattttcacgagcttataacgttttttgataagctaattcaagtagc 44984351  T
Q  101 ttatagcttgtcactttttatctccatcttaccc 134  Q
    |||||| || |||||||||||||| || ||||||    
T  44984350 ttataggttatcactttttatctcaattttaccc 44984317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 31062937 - 31063012
Alignment:
Q  34 ttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagctt 109  Q
    ||||| ||||||||||| ||||||| || ||||||| ||| | ||||||||||||| |||||||||||||||||||    
T  31062937 ttttatacgagcttataacttattttcaagagcttatagcggtttttgataagctatttcaagtagcttatagctt 31063012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 42139387 - 42139491
Alignment:
Q  43 agcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccctacaatc 142  Q
    ||||||||||||||||  || |||||| ||| |||||||  |||||||||||||||| ||||||||| ||| | |||||||| || ||||||||  ||||    
T  42139387 agcttatagcttatttttattagcttatagc-ggttttgtcaagctaattcaagtagattatagcttatcattatttatctcaattttacccctctaatc 42139485  T
Q  143 ttaatt 148  Q
    ||||||    
T  42139486 ttaatt 42139491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 15804441 - 15804512
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    ||||||||||||||||||||||||||||||||| ||| | |||||||| || |||||| |  ||||||||||    
T  15804441 ttttgataagctaattcaagtagcttatagcttatcattatttatctcaattttacccttctaatcttaatt 15804512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 42034452 - 42034516
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccctacaat 141  Q
    ||||||||||||||||||||||| ||||||||| ||| |  ||||||| || |||||| ||||||    
T  42034452 ttttgataagctaattcaagtagattatagcttatcattacttatctcaattttacccttacaat 42034516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 21721814 - 21721885
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccctacaatcttaatt 148  Q
    ||||||||||||||||| |||| |||||  ||| | ||||||||||||||| |||||| | |||| ||||||    
T  21721814 ttttgataagctaattctagtatcttatgacttataactttttatctccattttacccttgcaatattaatt 21721885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 27679071 - 27679141
Alignment:
Q  39 cacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagctt 109  Q
    ||||||||||||||||||||  |  |||||| |||   |||| ||||||||||||||||||||||| ||||    
T  27679071 cacgagcttatagcttatttttactagcttatagcgttttttaataagctaattcaagtagcttatggctt 27679141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 12238651 - 12238594
Alignment:
Q  42 gagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtag 99  Q
    |||||||| |||||||| |||||| ||| ||| | ||| |||||||||||||||||||    
T  12238651 gagcttatggcttattttcatgagtttatagcggttttcgataagctaattcaagtag 12238594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 15804508 - 15804549
Alignment:
Q  184 taattttaccaaacattacaaattcaaacaactagcttatcc 225  Q
    ||||||||||||||||||||||||||| || |||| ||||||    
T  15804508 taattttaccaaacattacaaattcaatcagctagtttatcc 15804549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 21722019 - 21722059
Alignment:
Q  234 tagcttataagtcacccactataagctagcttatcagctat 274  Q
    |||||||||||||| || | |||||||||||||||||||||    
T  21722019 tagcttataagtcatccgcaataagctagcttatcagctat 21722059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 339068 - 339000
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccctacaatctta 145  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||| || | |||||| ||||||||    
T  339068 ttttgataagctaattcaagtagcttatagcttatcaccttttatctcgatttcacccctgcaatctta 339000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 1288296 - 1288411
Alignment:
Q  34 ttttacacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacc 133  Q
    ||||||||||| | ||||||||||  |||||||||| |     |||||||||| ||||||||||| |||||  ||||||||||||||||| ||| |||||    
T  1288296 ttttacacgagttcatagcttattctcatgagcttataatgttttttgataagttaattcaagtatcttattacttgtcactttttatcttcattttacc 1288395  T
Q  134 c-ctacaatcttaatt 148  Q
    | ||||||||||||||    
T  1288396 cgctacaatcttaatt 1288411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 29052727 - 29052824
Alignment:
Q  178 aaccgctaattttaccaaacattacaaattcaaacaactagcttatcc-gtatgagctagcttataagtcacccactataagctagcttatcagctat 274  Q
    ||||||| ||||||||||||| | ||||||||| || |||||||||||  ||| ||||||||||| |   | ||||||||||||| ||||||||||||    
T  29052727 aaccgcttattttaccaaacactgcaaattcaatcagctagcttatcctatataagctagcttatcaactatccactataagctaacttatcagctat 29052824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 8014740 - 8014698
Alignment:
Q  77 ttttgataagctaattcaagtagcttatagcttgtcacttttt 119  Q
    ||||||||||||||||||| ||||||||||||| | |||||||    
T  8014740 ttttgataagctaattcaattagcttatagcttataacttttt 8014698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 27903952 - 27903899
Alignment:
Q  80 tgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacc 133  Q
    |||||||||||||||| ||||||||| ||| ||| |||||||||| || |||||    
T  27903952 tgataagctaattcaaatagcttataccttatcagtttttatctcaattttacc 27903899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 166751 - 166814
Alignment:
Q  160 atattaattagctaatccaaccgctaattttaccaaacattacaaattcaaacaactagcttat 223  Q
    ||||| || ||||| | |||||||||||||||||||||| ||||||||||| || |||||||||    
T  166751 atatttataagctagttcaaccgctaattttaccaaacactacaaattcaatcagctagcttat 166814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 166590 - 166697
Alignment:
Q  39 cacgagcttatagcttatttccatgagcttacagcaggttttgataagctaattcaagtagcttatagcttgtcactttttatctccatcttacccctac 138  Q
    |||||||||||| |||||||  |  |||||| |||  |||||||||||||||| |||||||| |||||||| |||   |||||||| || |||||| |      
T  166590 cacgagcttataacttatttttactagcttatagc--gttttgataagctaatccaagtagcctatagcttatcatcatttatctctattttacccttgt 166687  T
Q  139 aatcttaatt 148  Q
    ||||||||||    
T  166688 aatcttaatt 166697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University