View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8223_high_10 (Length: 241)

Name: NF8223_high_10
Description: NF8223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8223_high_10
NF8223_high_10
[»] chr4 (13 HSPs)
chr4 (11-241)||(17416405-17416635)
chr4 (14-241)||(26500175-26500401)
chr4 (52-241)||(10388516-10388705)
chr4 (13-241)||(40813676-40813907)
chr4 (136-240)||(37707376-37707480)
chr4 (54-241)||(1799101-1799288)
chr4 (137-185)||(53756767-53756815)
chr4 (14-88)||(43809437-43809511)
chr4 (153-186)||(2792312-2792345)
chr4 (136-185)||(4305736-4305785)
chr4 (153-186)||(39041312-39041345)
chr4 (153-185)||(31050700-31050732)
chr4 (147-179)||(39421045-39421077)
[»] chr5 (15 HSPs)
chr5 (11-241)||(25341653-25341884)
chr5 (52-241)||(2707016-2707205)
chr5 (53-237)||(29685785-29685969)
chr5 (52-241)||(35847052-35847242)
chr5 (52-241)||(42742273-42742461)
chr5 (52-130)||(40377661-40377739)
chr5 (137-241)||(18557492-18557595)
chr5 (66-241)||(3204239-3204413)
chr5 (54-241)||(39368817-39369004)
chr5 (52-130)||(25362339-25362417)
chr5 (14-104)||(34346029-34346120)
chr5 (147-185)||(13954266-13954304)
chr5 (147-185)||(34378109-34378147)
chr5 (136-181)||(18593258-18593303)
chr5 (136-185)||(33258903-33258952)
[»] chr3 (17 HSPs)
chr3 (52-241)||(16285021-16285210)
chr3 (136-241)||(2782090-2782195)
chr3 (52-241)||(17324094-17324283)
chr3 (69-240)||(45181550-45181721)
chr3 (14-130)||(29016545-29016659)
chr3 (136-240)||(3968571-3968675)
chr3 (136-240)||(4000130-4000234)
chr3 (139-185)||(20710732-20710778)
chr3 (147-241)||(30127217-30127311)
chr3 (147-185)||(14879446-14879484)
chr3 (147-185)||(17550968-17551006)
chr3 (147-185)||(19176513-19176551)
chr3 (147-185)||(34475786-34475824)
chr3 (137-234)||(18983225-18983321)
chr3 (156-212)||(24099368-24099424)
chr3 (147-179)||(37123399-37123431)
chr3 (147-179)||(47945723-47945755)
[»] chr8 (13 HSPs)
chr8 (52-241)||(38387873-38388062)
chr8 (52-225)||(46163-46336)
chr8 (96-241)||(31179808-31179953)
chr8 (14-129)||(4489625-4489739)
chr8 (136-241)||(40531189-40531292)
chr8 (137-241)||(544372-544476)
chr8 (54-127)||(23264777-23264850)
chr8 (66-188)||(33967334-33967458)
chr8 (136-176)||(36796626-36796666)
chr8 (147-185)||(9519510-9519548)
chr8 (147-185)||(24995427-24995465)
chr8 (147-185)||(31207394-31207432)
chr8 (153-185)||(34389043-34389075)
[»] chr2 (13 HSPs)
chr2 (66-241)||(4161969-4162145)
chr2 (54-239)||(4397369-4397554)
chr2 (52-241)||(41958188-41958376)
chr2 (14-241)||(42048114-42048342)
chr2 (136-240)||(9560809-9560913)
chr2 (137-239)||(44888341-44888443)
chr2 (52-241)||(37128860-37129049)
chr2 (54-220)||(23665340-23665509)
chr2 (153-185)||(10173616-10173648)
chr2 (147-185)||(10524108-10524146)
chr2 (147-185)||(14405209-14405247)
chr2 (147-185)||(22885165-22885203)
chr2 (153-185)||(1269494-1269526)
[»] chr1 (16 HSPs)
chr1 (52-193)||(4397407-4397548)
chr1 (136-240)||(13987577-13987681)
chr1 (14-241)||(38709908-38710133)
chr1 (71-241)||(4391562-4391732)
chr1 (140-220)||(38564878-38564957)
chr1 (116-236)||(28887732-28887854)
chr1 (136-185)||(46692840-46692889)
chr1 (153-185)||(27031878-27031910)
chr1 (147-187)||(30655569-30655609)
chr1 (147-185)||(5459172-5459210)
chr1 (147-185)||(7857664-7857702)
chr1 (147-185)||(9313321-9313359)
chr1 (147-185)||(31585792-31585830)
chr1 (147-185)||(41920463-41920501)
chr1 (147-185)||(46814499-46814537)
chr1 (139-187)||(17891520-17891568)
[»] chr7 (15 HSPs)
chr7 (54-241)||(6003329-6003516)
chr7 (139-240)||(27993560-27993661)
chr7 (116-220)||(46262119-46262224)
chr7 (56-220)||(25153197-25153362)
chr7 (137-241)||(35206715-35206819)
chr7 (66-241)||(17802765-17802941)
chr7 (136-179)||(3478369-3478412)
chr7 (155-241)||(2570115-2570201)
chr7 (147-185)||(6584920-6584958)
chr7 (147-185)||(9349760-9349798)
chr7 (147-185)||(13311850-13311888)
chr7 (147-185)||(34389973-34390011)
chr7 (147-185)||(38306272-38306310)
chr7 (147-185)||(38485567-38485605)
chr7 (147-179)||(10244199-10244231)
[»] chr6 (7 HSPs)
chr6 (137-240)||(7546451-7546554)
chr6 (153-241)||(12129173-12129260)
chr6 (153-185)||(16510339-16510371)
chr6 (147-218)||(34105391-34105462)
chr6 (147-185)||(26216051-26216089)
chr6 (147-185)||(26534751-26534789)
chr6 (150-187)||(34092804-34092841)
[»] scaffold0068 (1 HSPs)
scaffold0068 (147-185)||(35803-35841)
[»] scaffold0620 (1 HSPs)
scaffold0620 (150-187)||(8138-8175)
[»] scaffold0200 (1 HSPs)
scaffold0200 (153-185)||(19394-19426)
[»] scaffold0119 (1 HSPs)
scaffold0119 (153-185)||(42176-42208)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 17416405 - 17416635
Alignment:
Q  11 catcaccaccaacagagttcaatttagcacccgatgattatttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagaca 110  Q
    |||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17416405 catcactaccaacagagttcaatttagcacccgataactatttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagaca 17416504  T
Q  111 tcacaaaagcctaaaaggacataggcaaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcaccc 210  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  17416505 tcacaaaagcctaaaaggacataggcaaaaaactagctcctgatctcgaatcaaaagtgatcggcccactaggctctcgacaccaatcatttaggcaccc 17416604  T
Q  211 ctcaactcacaaaccactagagcagacacct 241  Q
    |||||||||| ||||||||||| ||||||||    
T  17416605 ctcaactcacgaaccactagagtagacacct 17416635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 26500175 - 26500401
Alignment:
Q  14 caccaccaacagagttcaatttagcacccgatgattatttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatca 113  Q
    |||||||||||| | | |||  |||||||||| |||  ||||||||||||| ||||||||||||||||||||||  || ||||| |||||||||||||||    
T  26500175 caccaccaacagtggtgaataaagcacccgat-attgattttgcttcaaacgttcagcttcgaccaccactcaagttccggtctatcggaggagacatca 26500273  T
Q  114 caaaagcctaaaaggacataggcaaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctc 213  Q
    ||| ||||||||||||| |  |  | ||||| |||||| | ||||||||||||| ||||| ||||| ||||| | ||||| | |||   |||||||||||    
T  26500274 caacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagacttccgacacaagtcaaaaaggcacccctc 26500373  T
Q  214 aactcacaaaccactagagcagacacct 241  Q
    ||||||| ||||||||||||| ||||||    
T  26500374 aactcacgaaccactagagcatacacct 26500401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 52 - 241
Target Start/End: Complemental strand, 10388705 - 10388516
Alignment:
Q  52 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 151  Q
    ||||||||||||| || ||||||||||||||||||| ||| ||||| || ||||||||||||||| ||||||||||||| |  |  | ||||| ||||||    
T  10388705 ttttgcttcaaacgtttagcttcgaccaccactcaagatccggtctatcagaggagacatcacaacagcctaaaaggacctgagtcataaacttgctccc 10388606  T
Q  152 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
     | ||||||||||||||||||||||||| ||||||  ||| | | |||   || || |||||||||||| || |||||||||||||||||    
T  10388605 gacctcgaatcaaaagtgatcggcccacaagactctcgacgcaagtcaaaaagacatccctcaactcacgaagcactagagcagacacct 10388516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 40813676 - 40813907
Alignment:
Q  13 tcaccaccaacagagttcaatttagcacccgatgattattt-ttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacat 111  Q
    ||||||||||||||| |||||  |||| ||||  |  |||| |||||||||||| |||| | ||||||||||||||| || |||  | |||||||||||     
T  40813676 tcaccaccaacagagatcaataaagcagccgacaaagatttgttgcttcaaacaatcagatgcgaccaccactcaacttccggtaagacggaggagacaa 40813775  T
Q  112 caca-aaagcctaaaaggacat-aggcaaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacc 209  Q
    |  | |||||||||||| || | || ||||||| | |||||| ||||||||||||||||||||||||||| ||||||| ||| | ||||||  |||||||    
T  40813776 ccaacaaagcctaaaagaacctgagtcaaaaaattggctcccgatctcgaatcaaaagtgatcggcccaccagactcccgacgcaaatcataaaggcacc 40813875  T
Q  210 cctcaactcacaaaccactagagcagacacct 241  Q
    | |||| |||| ||||||||||||||||||||    
T  40813876 cttcaattcacgaaccactagagcagacacct 40813907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 37707376 - 37707480
Alignment:
Q  136 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcag 235  Q
    ||||||||||| |||  ||||||||||||||||||||||||||| ||||||| |||||  | ||   |||||||||||||||||| |||||| |||||||    
T  37707376 caaaaaactagttcctgatctcgaatcaaaagtgatcggcccaccagactcccgacacatagcaaaaaggcacccctcaactcacgaaccaccagagcag 37707475  T
Q  236 acacc 240  Q
    |||||    
T  37707476 acacc 37707480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 241
Target Start/End: Complemental strand, 1799288 - 1799101
Alignment:
Q  54 ttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctcccta 153  Q
    |||||||||||  |||||||||||||||||||||  | |||| | |||||||||||||||||| ||||||||||||| |  |  | ||||| |||||  |    
T  1799288 ttgcttcaaacgatcagcttcgaccaccactcaaattttggtttatcggaggagacatcacaatagcctaaaaggacctgagacacaaacttgctcctga 1799189  T
Q  154 tctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
     || |||||||||| | | || | || |||||||| |||| | |||   |||||||||||||||||| ||||||  ||||||||||||    
T  1799188 cctagaatcaaaagcgtttggtcaacaagactccttacacaagtcaaaaaggcacccctcaactcacgaaccaccggagcagacacct 1799101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 53756815 - 53756767
Alignment:
Q  137 aaaaaactagctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    |||||||||||| || ||||||||||||||||||||||||||| |||||    
T  53756815 aaaaaactagcttccgatctcgaatcaaaagtgatcggcccaccagact 53756767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 43809511 - 43809437
Alignment:
Q  14 caccaccaacagagttcaatttagcacccgatgattatttttgcttcaaacattcagcttcgaccaccactcaac 88  Q
    ||||| |||| |||||||||| |||||||||| || ||||||| ||||||| ||||  ||||||||||| |||||    
T  43809511 caccaacaacggagttcaattaagcacccgataatgatttttgtttcaaacgttcaaattcgaccaccaatcaac 43809437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 186
Target Start/End: Original strand, 2792312 - 2792345
Alignment:
Q  153 atctcgaatcaaaagtgatcggcccactagactc 186  Q
    |||||||||||||||||||||||| |||||||||    
T  2792312 atctcgaatcaaaagtgatcggcctactagactc 2792345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 4305785 - 4305736
Alignment:
Q  136 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    |||| ||||| ||||| ||||||||||||||||||||| ||||| |||||    
T  4305785 caaagaactaactcccgatctcgaatcaaaagtgatcgccccaccagact 4305736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 186
Target Start/End: Original strand, 39041312 - 39041345
Alignment:
Q  153 atctcgaatcaaaagtgatcggcccactagactc 186  Q
    ||||||||||||||||||||||||||| ||||||    
T  39041312 atctcgaatcaaaagtgatcggcccaccagactc 39041345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 31050700 - 31050732
Alignment:
Q  153 atctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||||||||||||||||||||||||| |||||    
T  31050700 atctcgaatcaaaagtgatcggcccaccagact 31050732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 39421045 - 39421077
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccac 179  Q
    ||||| |||||||||||||||||||||||||||    
T  39421045 ctcccgatctcgaatcaaaagtgatcggcccac 39421077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 25341884 - 25341653
Alignment:
Q  11 catcaccaccaacagagttcaatttagcacccgatgattatttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagaca 110  Q
    ||||||||||||||||||| |||| |||||||||  || |||||||||  |||| ||||||||| ||||||| ||||| || |||| |||||||||||||    
T  25341884 catcaccaccaacagagtttaattaagcacccgaaaataatttttgctcaaaacgttcagcttctaccaccaatcaacttccggtcagtcggaggagaca 25341785  T
Q  111 tcacaaaagcctaaaaggacat-aggcaaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacc 209  Q
    |||||||||||||||||||| |  | |||||| ||| ||| | ||||| ||||||||||||||||||||| ||||||| |||||  |||||  |||||||    
T  25341784 tcacaaaagcctaaaaggacctgtgtcaaaaatctaactctcaatctcaaatcaaaagtgatcggcccaccagactcccgacacacatcatcaaggcacc 25341685  T
Q  210 cctcaactcacaaaccactagagcagacacct 241  Q
    ||| ||||||| || ||| |||||||| ||||    
T  25341684 cctgaactcacgaagcaccagagcagaaacct 25341653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 52 - 241
Target Start/End: Complemental strand, 2707205 - 2707016
Alignment:
Q  52 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 151  Q
    ||||||||||||| |||||||| |||||||||||||  |  | ||| ||||||||||||   |||||||||||||||||||  |  | ||||||||||||    
T  2707205 ttttgcttcaaacgttcagctttgaccaccactcaagttacgatctttcggaggagacaatgcaaaagcctaaaaggacatgagtcacaaactagctccc 2707106  T
Q  152 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
     | ||||||||||||||||||||  ||||||||||| ||||| | ||||| | |||||||||||||||| ||||||  |||||| |||||    
T  2707105 gacctcgaatcaaaagtgatcggttcactagactcccgacacaagtcattaaagcacccctcaactcacgaaccaccggagcaggcacct 2707016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 237
Target Start/End: Complemental strand, 29685969 - 29685785
Alignment:
Q  53 tttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccct 152  Q
    |||||||||||| ||||||||| |||||||| |||  || ||||| ||||||||||| |||||||||||||||||||  |  |  | ||||||||||||     
T  29685969 tttgcttcaaacgttcagcttccaccaccacacaaattccggtctatcggaggagacttcacaaaagcctaaaaggatctgagtcacaaactagctcccg 29685870  T
Q  153 atctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagac 237  Q
    |  |||||||||||||||||| |||| |||||||| |||||   ||||| ||| || ||||||||||| |||||| |||||||||    
T  29685869 acttcgaatcaaaagtgatcgacccattagactcccgacacaggtcattaaggtactcctcaactcacgaaccaccagagcagac 29685785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 241
Target Start/End: Complemental strand, 35847242 - 35847052
Alignment:
Q  52 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 151  Q
    ||||||||||||| ||||||||||||||||||||||   | ||||| |||||||||||||||||  |||||||||||||    |  | ||||  ||||||    
T  35847242 ttttgcttcaaacgttcagcttcgaccaccactcaagtcccggtctatcggaggagacatcacagcagcctaaaaggacccgagtcacaaacgtgctccc 35847143  T
Q  152 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatc-atttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
     | ||||||||||||  ||||||||||| | ||||| ||||| | || |   |||||||| |||||||||||||||| |||||||||||||    
T  35847142 gacctcgaatcaaaatcgatcggcccacaaaactcccgacacaagtcaaaaaaggcacccatcaactcacaaaccaccagagcagacacct 35847052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 42742273 - 42742461
Alignment:
Q  52 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 151  Q
    |||| |||||||| | || ||| |||||||||||||  ||  |||| |||||||||||||||||| |||||||||||||||  |  | ||||| ||||||    
T  42742273 ttttccttcaaacgtacaactttgaccaccactcaagttccagtctatcggaggagacatcacaacagcctaaaaggacatgagtcacaaacttgctccc 42742372  T
Q  152 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
     | ||||||||||||| |||| |||||| ||||||| ||||| | |||   ||||||||| |||| ||| |||||| |||||||||||||    
T  42742373 gacctcgaatcaaaagcgatc-gcccacaagactcccgacacaagtcaaaaaggcaccccacaacccacgaaccaccagagcagacacct 42742461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 40377739 - 40377661
Alignment:
Q  52 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggac 130  Q
    |||| |||||||| ||||| ||| |||||||||||| ||| ||||| |||||||||||||||||| |||||||||||||    
T  40377739 ttttacttcaaacgttcaggttccaccaccactcaagatccggtctatcggaggagacatcacaacagcctaaaaggac 40377661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 18557595 - 18557492
Alignment:
Q  137 aaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcaga 236  Q
    |||||||||||||   |||||||||||||||||||||||||| |||||||| ||||| |||||    ||||||||||||||||| | |||| |||| |||    
T  18557595 aaaaaactagctctggatctcgaatcaaaagtgatcggccca-tagactcccgacacaaatcaaaacggcacccctcaactcacgacccaccagagtaga 18557497  T
Q  237 cacct 241  Q
    |||||    
T  18557496 cacct 18557492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 241
Target Start/End: Complemental strand, 3204413 - 3204239
Alignment:
Q  66 ttcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccctatctcgaatcaaa 165  Q
    |||||||| |||||||||||||  ||| || | |||||||||||||||||| |||||||||| |  || |  | ||||| |||||| | |||||||||||    
T  3204413 ttcagctttgaccaccactcaagttctagtatatcggaggagacatcacaacagcctaaaagaatctaagtcacaaacttgctcccgacctcgaatcaaa 3204314  T
Q  166 agtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
    |  ||| || |||| ||||| ||||||| | | |   |||||||||||||||||| | |||| |||||| ||||||    
T  3204313 aacgattggtccacaagact-ctgacacaagttaaaaaggcacccctcaactcacgagccaccagagcatacacct 3204239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 241
Target Start/End: Complemental strand, 39369004 - 39368817
Alignment:
Q  54 ttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctcccta 153  Q
    ||||||||||| |||||||||||||||||||||    | ||||   | ||||||||| ||||| | |||||||| || |  |  ||||||| |||||| |    
T  39369004 ttgcttcaaacgttcagcttcgaccaccactcacgtcccggtcgcactgaggagacaacacaacaacctaaaagaacctgagtcaaaaacttgctcccga 39368905  T
Q  154 tctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
     ||||||||||||| | ||||||||| ||||||| ||||| | |||   || |||| |||||||||| |||||| || | ||||||||    
T  39368904 cctcgaatcaaaagcggtcggcccacaagactcccgacacaagtcaaaaagacacctctcaactcacgaaccaccagggaagacacct 39368817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 25362417 - 25362339
Alignment:
Q  52 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggac 130  Q
    ||||||||||||| ||||||||| | ||||||||||  || ||||| ||   ||||||||||||| |||||||||||||    
T  25362417 ttttgcttcaaacgttcagcttcaatcaccactcaagttccggtctatcaatggagacatcacaacagcctaaaaggac 25362339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 34346029 - 34346120
Alignment:
Q  14 caccaccaacagagttcaatttagcacccgatgatta-tttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggag 104  Q
    ||||||||||||||||||||| |||||||||| |  | || ||| ||||||| ||||| || ||||| || ||||| || ||||||||||||    
T  34346029 caccaccaacagagttcaattaagcacccgataaggacttgttgattcaaacgttcagatttgaccatcaatcaacttccggtctgtcggag 34346120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 13954266 - 13954304
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  13954266 ctcccgatctcgaatcaaaagtgatcggcccaccagact 13954304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 34378147 - 34378109
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  34378147 ctcccgatctcgaatcaaaagtgatcggcccaccagact 34378109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 18593303 - 18593258
Alignment:
Q  136 caaaaaactagctccctatctcgaatcaaaagtgatcggcccacta 181  Q
    |||| ||||| ||||| |||||||||||||||||||| ||||||||    
T  18593303 caaagaactaactcccgatctcgaatcaaaagtgatctgcccacta 18593258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 33258903 - 33258952
Alignment:
Q  136 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    |||| ||||| ||||  ||||||||||||||||||||||||||| |||||    
T  33258903 caaagaactaactcctgatctcgaatcaaaagtgatcggcccaccagact 33258952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 241
Target Start/End: Complemental strand, 16285210 - 16285021
Alignment:
Q  52 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 151  Q
    ||||||||||||  |||||||| |||||||||||||  || ||| | ||||||||| | |||||| ||||||||||||| |  |    ||||| ||||||    
T  16285210 ttttgcttcaaatgttcagctttgaccaccactcaagttccggtttatcggaggagccgtcacaacagcctaaaaggacctgagtcgcaaacttgctccc 16285111  T
Q  152 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
     | ||||||||||||| ||||||||||| ||||||| ||||| | |||   |||||||||||||||||| |||||| |||||||||||||    
T  16285110 gacctcgaatcaaaagcgatcggcccacaagactccagacactagtcaaaaaggcacccctcaactcacgaaccacaagagcagacacct 16285021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 2782090 - 2782195
Alignment:
Q  136 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcag 235  Q
    ||||||||| |||||| ||||  ||||||||||||||| ||||| ||||||  ||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  2782090 caaaaaactggctcccgatctaaaatcaaaagtgatcgtcccaccagactctcgacacaaatcattaaggcacccctcaactcacaaaccaccagagcag 2782189  T
Q  236 acacct 241  Q
    ||||||    
T  2782190 acacct 2782195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 17324094 - 17324283
Alignment:
Q  52 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 151  Q
    ||||||||||||| |||||||||||||||||||| |  ||  || | |||||||||||||||||| ||| ||||||||| || |  | ||||| ||||||    
T  17324094 ttttgcttcaaacgttcagcttcgaccaccactctagttccagtatatcggaggagacatcacaatagcttaaaaggacctaagtcagaaacttgctccc 17324193  T
Q  152 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
     | ||||||||||||| ||||||||||| ||||||  ||||  | | |   |||||||||||||||||| ||||||  ||| ||||||||    
T  17324194 gacctcgaatcaaaagagatcggcccacaagactcacgacataagtaaaaaaggcacccctcaactcacgaaccaccggagtagacacct 17324283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 69 - 240
Target Start/End: Complemental strand, 45181721 - 45181550
Alignment:
Q  69 agcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccctatctcgaatcaaaagt 168  Q
    |||||||||||||||| ||  || ||||| ||| |||||||||||||| ||||||||||||| |  |  | ||||| ||| || | |||||||||||||     
T  45181721 agcttcgaccaccacttaagttccggtctatcgaaggagacatcacaacagcctaaaaggacctgagtcacaaacttgcttccgacctcgaatcaaaagc 45181622  T
Q  169 gatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 240  Q
    ||| ||||||| ||||||| ||||  | |||   |||||||||||||||||| |||||| ||||||||||||    
T  45181621 gattggcccacaagactcccgacaaaagtcaaaaaggcacccctcaactcacgaaccaccagagcagacacc 45181550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 29016659 - 29016545
Alignment:
Q  14 caccaccaacagagttcaatttagcacccgatgattatttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatca 113  Q
    ||||| ||||| |||||||||  ||||||||| || ||||  |||||||||||| |||||||||||||||||||  || ||||| ||||||||||||||     
T  29016659 caccatcaacatagttcaattacgcacccgataatgattt--gcttcaaacattgagcttcgaccaccactcaaattccggtctatcggaggagacatcc 29016562  T
Q  114 caaaagcctaaaaggac 130  Q
    ||||| |||||||||||    
T  29016561 caaaaacctaaaaggac 29016545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 3968571 - 3968675
Alignment:
Q  136 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcag 235  Q
    |||||||||||||||  |||||||| |||||| ||| || |||| ||||||| ||||| ||||||  |||||||||||||||||| |||||| |||||||    
T  3968571 caaaaaactagctcctgatctcgaagcaaaagcgattggtccaccagactcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcag 3968670  T
Q  236 acacc 240  Q
    |||||    
T  3968671 acacc 3968675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 4000234 - 4000130
Alignment:
Q  136 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcag 235  Q
    |||||||||||||||  |||||||| |||||| ||| || |||| ||||||| ||||| ||||||  |||||||||||||||||| |||||| |||||||    
T  4000234 caaaaaactagctcctgatctcgaagcaaaagcgattggtccaccagactcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcag 4000135  T
Q  236 acacc 240  Q
    |||||    
T  4000134 acacc 4000130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 20710732 - 20710778
Alignment:
Q  139 aaaactagctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  20710732 aaaactagctcccgatctcgaatcaaaagtgatcggcccaccagact 20710778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 30127311 - 30127217
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
    ||||| ||||||||||||||| ||||||| ||| ||||||| || || ||||| |   ||||||||||| ||  ||||||||| |||||||||||    
T  30127311 ctcccgatctcgaatcaaaagcgatcggctcaccagactcccgaaacaaatcaatagagcacccctcaattcctaaaccactatagcagacacct 30127217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 14879484 - 14879446
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  14879484 ctcccgatctcgaatcaaaagtgatcggcccaccagact 14879446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 17551006 - 17550968
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  17551006 ctcccgatctcgaatcaaaagtgatcggcccaccagact 17550968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 19176551 - 19176513
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  19176551 ctcccgatctcgaatcaaaagtgatcggcccaccagact 19176513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 34475786 - 34475824
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  34475786 ctcccgatctcgaatcaaaagtgatcggcccaccagact 34475824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 18983321 - 18983225
Alignment:
Q  137 aaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagca 234  Q
    ||||||||||||||  ||||||||||| || ||||||| |||  ||||||  |||||  |||| | ||||||| |||||||||||| |||| ||||||    
T  18983321 aaaaaactagctccg-atctcgaatcataattgatcggtccatcagactctcgacacagatcaataaggcaccactcaactcacaacccaccagagca 18983225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 24099368 - 24099424
Alignment:
Q  156 tcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccct 212  Q
    |||||||||||||||||||||||| ||||||   | || ||||||| ||||||||||    
T  24099368 tcgaatcaaaagtgatcggcccaccagactctataaacaaatcattaaggcacccct 24099424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 37123431 - 37123399
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccac 179  Q
    ||||| |||||||||||||||||||||||||||    
T  37123431 ctcccaatctcgaatcaaaagtgatcggcccac 37123399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 47945755 - 47945723
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccac 179  Q
    ||||| |||||||||||||||||||||||||||    
T  47945755 ctcccgatctcgaatcaaaagtgatcggcccac 47945723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 52 - 241
Target Start/End: Complemental strand, 38388062 - 38387873
Alignment:
Q  52 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 151  Q
    ||||||||||||| ||||||||||||||||||||||   || |||| || || |||||||||||| ||||||||||||| |  |  | ||||| |||||     
T  38388062 ttttgcttcaaacgttcagcttcgaccaccactcaagtcctagtctatcagatgagacatcacaatagcctaaaaggacctgagtcacaaacttgctcct 38387963  T
Q  152 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
     | || |||||||||||||| ||||||| ||||||| ||||  | |||   |||||||||||||||||| |||||| |||||| ||||||    
T  38387962 gaccttgaatcaaaagtgattggcccacaagactcccgacataagtcaaaaaggcacccctcaactcacgaaccaccagagcaaacacct 38387873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 46163 - 46336
Alignment:
Q  52 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 151  Q
    ||||||||||||| |||| ||| |||||||||||||  ||  |||| |||||||||||||||||| | ||||||||||| |  |  | ||||| ||||||    
T  46163 ttttgcttcaaacgttcaactttgaccaccactcaagttccagtctatcggaggagacatcacaacaacctaaaaggacctgagtcagaaacttgctccc 46262  T
Q  152 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaacc 225  Q
     | || |||||||||| ||| ||||||| ||||||| ||||| | |||   |||||||||||||||||| ||||    
T  46263 gacctggaatcaaaagcgattggcccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaacc 46336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 31179808 - 31179953
Alignment:
Q  96 ctgtcggaggagacatcacaaaagcctaaaaggacatagg-caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacacc 194  Q
    ||||||||||||||| |  || ||||||||||||| || | |||||| || |||||| |||||  |||||||||||||||||||| ||| |||  ||||     
T  31179808 ctgtcggaggagacacccaaatagcctaaaaggacctaagtcaaaaatctggctcccaatctcagatcaaaagtgatcggcccaccagattcccaacaca 31179907  T
Q  195 aatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
    ||||||| ||||| |||| ||||||  ||||||||||||||||||||    
T  31179908 aatcattaaggca-cccttaactcatgaaccactagagcagacacct 31179953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 4489625 - 4489739
Alignment:
Q  14 caccaccaacagagttcaatttagcacccgatgattatttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatca 113  Q
    ||||||||| || ||| |||| ||||| |||| || ||||| ||||||||| || |||||| ||||||||||||  ||  |||| |||||||||||||||    
T  4489625 caccaccaatagtgttaaattaagcactcgataatgatttt-gcttcaaacgtttagcttctaccaccactcaagttccagtctatcggaggagacatca 4489723  T
Q  114 caaaagcctaaaagga 129  Q
    ||||||||||||||||    
T  4489724 caaaagcctaaaagga 4489739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 241
Target Start/End: Complemental strand, 40531292 - 40531189
Alignment:
Q  136 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcag 235  Q
    |||||||||||||||| ||||||||||||||||||||||||||  |||||  |||||| |||||    ||||||||||||||||  | |||| |||||||    
T  40531292 caaaaaactagctcccgatctcgaatcaaaagtgatcggcccatcagact--tgacacaaatcaaaacggcacccctcaactcaagacccaccagagcag 40531195  T
Q  236 acacct 241  Q
    ||||||    
T  40531194 acacct 40531189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 544372 - 544476
Alignment:
Q  137 aaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcaga 236  Q
    |||||||||||| || |||||||||| |||||||||| ||||| ||||||| ||||| |||||    |||| || ||||||||||| |||| ||||||||    
T  544372 aaaaaactagcttccgatctcgaatctaaagtgatcgacccaccagactcccgacacaaatcaaaacggcatccgtcaactcacaatccaccagagcaga 544471  T
Q  237 cacct 241  Q
    |||||    
T  544472 cacct 544476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 23264850 - 23264777
Alignment:
Q  54 ttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaag 127  Q
    |||||||||||  |||| ||||||||||||| ||| || | | |||||||||||||| || |||||||||||||    
T  23264850 ttgcttcaaacgatcagattcgaccaccacttaacttccgatatgtcggaggagacaccaaaaaagcctaaaag 23264777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 33967458 - 33967334
Alignment:
Q  66 ttcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaa-aagcctaaaaggacatagg-caaaaaactagctccctatctcgaatca 163  Q
    ||||| ||||||||||| ||||| ||| |||  |||||| ||||| || || || ||||||| ||| || | ||||||  | |||||  |||||||||||    
T  33967458 ttcagattcgaccaccaatcaacttctagtcaatcggagaagacaccaaaataaacctaaaaagacctaagtcaaaaagttggctcctgatctcgaatca 33967359  T
Q  164 aaagtgatcggcccactagactcct 188  Q
    |||||||||||||||| ||||||||    
T  33967358 aaagtgatcggcccaccagactcct 33967334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 36796666 - 36796626
Alignment:
Q  136 caaaaaactagctccctatctcgaatcaaaagtgatcggcc 176  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  36796666 caaaaaactagttcccgatctcgaatcaaaagtgatcggcc 36796626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 9519548 - 9519510
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  9519548 ctcccgatctcgaatcaaaactgatcggcccactagact 9519510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 24995427 - 24995465
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  24995427 ctcccgatctcgaatcaaaagtgatcggcccaccagact 24995465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 31207394 - 31207432
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  31207394 ctcccgatctcgaatcaaaagtgatcggcccaccagact 31207432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 34389043 - 34389075
Alignment:
Q  153 atctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||||||||||||||||||||||||| |||||    
T  34389043 atctcgaatcaaaagtgatcggcccaccagact 34389075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 66 - 241
Target Start/End: Original strand, 4161969 - 4162145
Alignment:
Q  66 ttcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaa-aagcctaaaaggacat-aggcaaaaaactagctccctatctcgaatca 163  Q
    ||||| ||||||||||| ||||| ||| ||||||||||| ||||| || || |||||||||| ||| | |  |||||| || |||||| |||||||||||    
T  4161969 ttcagattcgaccaccaatcaacttctagtctgtcggagaagacaccaaaataagcctaaaaagacctgactcaaaaagctggctcccgatctcgaatca 4162068  T
Q  164 aaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
    |||||||||||||||| |||||||  |||| |||||  ||||||||||||||||| | |||||| |||||| ||||||    
T  4162069 aaagtgatcggcccaccagactcccaacacaaatca-ctaggcacccctcaactctcgaaccaccagagcatacacct 4162145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 239
Target Start/End: Original strand, 4397369 - 4397554
Alignment:
Q  54 ttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctcccta 153  Q
    ||||||||||| | ||||||||||||||||||||  || ||||| |||||||||||||||||| | ||||||||||| |  |  | ||||| |||||| |    
T  4397369 ttgcttcaaacgtacagcttcgaccaccactcaagttccggtctttcggaggagacatcacaacaacctaaaaggacctgagtcacaaacttgctcccga 4397468  T
Q  154 tctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacac 239  Q
     ||||||||||||| |||| |||||| ||||||| || |  | |||    ||||||||||||||||| |||||| | |||||||||    
T  4397469 cctcgaatcaaaagcgatcagcccacaagactcccgagagaagtcaaaatggcacccctcaactcacgaaccaccatagcagacac 4397554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 241
Target Start/End: Complemental strand, 41958376 - 41958188
Alignment:
Q  52 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 151  Q
    ||||| ||||||  ||||||||||||||||||||||  |  ||||| || |||||||| | |||| || |||||||||| |  |  | ||||| ||| ||    
T  41958376 ttttgtttcaaatgttcagcttcgaccaccactcaagtttcggtctatcagaggagacgttacaacagactaaaaggacctgagtcacaaacttgcttcc 41958277  T
Q  152 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
     | ||||||||||||||| |||||| || ||||||||||||| | |||   |||||||| |||||||||||||||| |||||||||||||    
T  41958276 gacctcgaatcaaaagtggtcggcc-acaagactcctgacacaagtcaaaaaggcacccttcaactcacaaaccaccagagcagacacct 41958188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 42048114 - 42048342
Alignment:
Q  14 caccaccaacagagttcaatttagcacccgatgattattt-ttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatc 112  Q
    ||||||||||| ||||||||| |||||| ||  || |||| ||||||||||  ||||  |||||| |||||| ||| |   |||| ||||||||||||||    
T  42048114 caccaccaacaaagttcaattaagcacc-gacaatgatttgttgcttcaaatgttcatattcgacaaccacttaactttcagtctatcggaggagacatc 42048212  T
Q  113 acaaaagcctaaaaggacat-aggcaaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccc 211  Q
       | ||||||||||||| | || ||||||||| ||||||  ||||||||||||||||||| |||||   |||||| ||||  |||||   ||||||| |    
T  42048213 catatagcctaaaaggacttgagtcaaaaaactggctcccggtctcgaatcaaaagtgatcagcccatcggactcccgacagaaatcaacaaggcacctc 42048312  T
Q  212 tcaactcacaaaccactagagcagacacct 241  Q
    ||||||||| |||||| |||||||||||||    
T  42048313 tcaactcacgaaccaccagagcagacacct 42048342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 9560809 - 9560913
Alignment:
Q  136 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcag 235  Q
    |||||||||||||||| |||||||||||||||||||||| |||| | |||   ||||| ||||||  |||||||||||||||||| ||| || |||||||    
T  9560809 caaaaaactagctcccgatctcgaatcaaaagtgatcggtccaccaaactttcgacacaaatcatcaaggcacccctcaactcacgaactaccagagcag 9560908  T
Q  236 acacc 240  Q
    |||||    
T  9560909 acacc 9560913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 44888341 - 44888443
Alignment:
Q  137 aaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcaga 236  Q
    ||||||||||||||| ||||||||| |||| |||||||||||| | ||||| ||||  ||||| | |||||||||||||||||| | |||| ||||||||    
T  44888341 aaaaaactagctcccaatctcgaataaaaaatgatcggcccaccaaactcccgacataaatcaataaggcacccctcaactcacgacccaccagagcaga 44888440  T
Q  237 cac 239  Q
    |||    
T  44888441 cac 44888443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 37128860 - 37129049
Alignment:
Q  52 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 151  Q
    |||||| |||||  ||||||||||||||||| ||||  |  ||||| |||||||||||||||||| | ||| ||||||| |  |  | ||||| | |||     
T  37128860 ttttgcatcaaatgttcagcttcgaccaccattcaagtttcggtctatcggaggagacatcacaacatcctgaaaggacttgagtcacaaacttgttccg 37128959  T
Q  152 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
     | ||||||||||||| ||||||||||| |||||||| |||| | |||   |||||||  ||||||||| |||||| |||||||||||||    
T  37128960 gacctcgaatcaaaagcgatcggcccacaagactcctaacacaagtcaaaaaggcacctatcaactcacgaaccaccagagcagacacct 37129049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 220
Target Start/End: Original strand, 23665340 - 23665509
Alignment:
Q  54 ttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaag-cctaaaaggacatagg-caaaaaa-ctagctcc 150  Q
    |||| ||||||  |||| |||| |||||||||||| |||| | ||||||||||||||  | ||||  |||||||| || |  | ||||||| |||| | |    
T  23665340 ttgcatcaaacgatcagattcgtccaccactcaacttctgatatgtcggaggagacacgaaaaaaaacctaaaagtacttgcgtcaaaaaagctagtttc 23665439  T
Q  151 ctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcac 220  Q
    | ||||||||||||||||||||||||||||||||||| || || ||| |    |||||||||||||||||    
T  23665440 cgatctcgaatcaaaagtgatcggcccactagactcccgatacaaataaaaatggcacccctcaactcac 23665509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 10173616 - 10173648
Alignment:
Q  153 atctcgaatcaaaagtgatcggcccactagact 185  Q
    |||||||||||||||||||||||||||||||||    
T  10173616 atctcgaatcaaaagtgatcggcccactagact 10173648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 10524146 - 10524108
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  10524146 ctcccgatctcgaatcaaaagtgatcggcccaccagact 10524108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 14405247 - 14405209
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  14405247 ctcccgatctcgaatcaaaagtgatcggcccaccagact 14405209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 22885165 - 22885203
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  22885165 ctcccgatctcgaatcaaaagtgatcggcccaccagact 22885203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 1269526 - 1269494
Alignment:
Q  153 atctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||||||||||||||||||||||||| |||||    
T  1269526 atctcgaatcaaaagtgatcggcccaccagact 1269494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 52 - 193
Target Start/End: Original strand, 4397407 - 4397548
Alignment:
Q  52 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 151  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||||||| |  |  | |||||  |||||    
T  4397407 ttttgcttcaaacgttcagcttcgaccaccactcaagatccggtctatcggaggagacatcacaacagcctaaaaggacctgagtcacaaacttactccc 4397506  T
Q  152 tatctcgaatcaaaagtgatcggcccactagactcctgacac 193  Q
     | ||||||||||||| ||||||| ||  ||||||| |||||    
T  4397507 gaactcgaatcaaaagcgatcggcacataagactcccgacac 4397548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 13987681 - 13987577
Alignment:
Q  136 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcag 235  Q
    |||||||||||||||| |||||||| |||||| ||| ||||||| ||| ||| ||||| ||||||  |||||||||||||||||| |||||| |||||||    
T  13987681 caaaaaactagctcccgatctcgaagcaaaagcgattggcccaccagattcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcag 13987582  T
Q  236 acacc 240  Q
    |||||    
T  13987581 acacc 13987577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 38710133 - 38709908
Alignment:
Q  14 caccaccaacagagttcaatttagcacccgatgattatttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatca 113  Q
    |||| ||||||| | ||||||| |||||| ||| | ||||| ||||||| | ||||||||||||||||||||||  || ||||| |||||||||||||||    
T  38710133 caccgccaacagtgatcaatttggcacccaatggtgatttt-gcttcaagcgttcagcttcgaccaccactcaagttccggtctatcggaggagacatca 38710035  T
Q  114 caaaagcctaaaaggacataggcaaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctc 213  Q
    ||| | ||||||||||| |  |  | ||||| |||||| | ||||||||||||| |||| |||||  ||||||| || || |  ||   |||||||||||    
T  38710034 caacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcagccca-aagactcccgaaacaaggcaaaaaggcacccctc 38709936  T
Q  214 aactcacaaaccactagagcagacacct 241  Q
    ||||||| |||||| ||| || ||||||    
T  38709935 aactcacgaaccaccagaacaaacacct 38709908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 241
Target Start/End: Complemental strand, 4391732 - 4391562
Alignment:
Q  71 cttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccctatctcgaatcaaaagtga 170  Q
    |||||||||||||||||  ||  |||| |||||||||||||||||| ||||||||||  |  || || |||||| |||||| | | ||||||||||| ||    
T  4391732 cttcgaccaccactcaagttcctgtctatcggaggagacatcacaacagcctaaaagacctgagtcacaaaacttgctcccgaccccgaatcaaaagcga 4391633  T
Q  171 tcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
    | ||||||| ||||||| ||||| |  ||   | |||||||||||||||| |||||| ||| |||||||||    
T  4391632 ttggcccacaagactcccgacacaaggcaaaaatgcacccctcaactcacgaaccaccagaacagacacct 4391562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 38564957 - 38564878
Alignment:
Q  140 aaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcac 220  Q
    |||| ||||||| ||||||||||||||| ||||||||||| |||||||| |||| |||||   ||||||||||||||||||    
T  38564957 aaaccagctcccgatctcgaatcaaaagcgatcggcccacgagactcctaacacaaatca-aaaggcacccctcaactcac 38564878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 28887854 - 28887732
Alignment:
Q  116 aaagcctaaaaggacat-aggcaaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacac-caatcatttaggcacccctc 213  Q
    |||||||||||| || | || |||||||||||| ||  |||||||||||| |||| ||||||||| ||||||| |||||  |||| |  |||||||||||    
T  28887854 aaagcctaaaagtacctgagtcaaaaaactagcgcctgatctcgaatcaagagtggtcggcccaccagactcccgacacaaaatcctaaaggcacccctc 28887755  T
Q  214 aactcacaaaccactagagcaga 236  Q
    ||||||  |||||| ||||||||    
T  28887754 aactcaagaaccaccagagcaga 28887732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 46692840 - 46692889
Alignment:
Q  136 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    |||| ||||| ||||| ||||||||||||||||||||||||||| |||||    
T  46692840 caaagaactaactcccgatctcgaatcaaaagtgatcggcccaccagact 46692889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 27031878 - 27031910
Alignment:
Q  153 atctcgaatcaaaagtgatcggcccactagact 185  Q
    |||||||||||||||||||||||||||||||||    
T  27031878 atctcgaatcaaaagtgatcggcccactagact 27031910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 30655609 - 30655569
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagactcc 187  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  30655609 ctcccgatctcgaatcaaaagcgatcggcccactagactcc 30655569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 5459210 - 5459172
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  5459210 ctcccgatctcgaatcaaaagtgatcggcccaccagact 5459172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 7857702 - 7857664
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  7857702 ctcccgatctcgaatcaaaagtgatcggcccaccagact 7857664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 9313321 - 9313359
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  9313321 ctcccgatctcgaatcaaaagtgatcagcccactagact 9313359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 31585792 - 31585830
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  31585792 ctcccgatctcgaatcaaaagtgatcggcccaccagact 31585830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 41920501 - 41920463
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  41920501 ctcccgatctcgaatcaaaagtgatcggcccaccagact 41920463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 46814499 - 46814537
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  46814499 ctcccgatctcgaatcaaaagtgatcggcccaccagact 46814537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 17891568 - 17891520
Alignment:
Q  139 aaaactagctccctatctcgaatcaaaagtgatcggcccactagactcc 187  Q
    |||||| |||||| |||||||||||||||||||||| |||  |||||||    
T  17891568 aaaacttgctcccaatctcgaatcaaaagtgatcggtccatcagactcc 17891520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 241
Target Start/End: Complemental strand, 6003516 - 6003329
Alignment:
Q  54 ttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctcccta 153  Q
    ||||||||||| ||||||||||||||||||||||  |   |||| ||||||| |||||||||| ||||||||||||| |  |  | ||| | ||| || |    
T  6003516 ttgcttcaaacgttcagcttcgaccaccactcaagtttcagtctatcggaggcgacatcacaacagcctaaaaggacctgagacacaaatttgcttccga 6003417  T
Q  154 tctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
     ||||||||||||| ||||||||||  ||||||||||||| |||||   ||||| | ||||| |||||||||||  ||||||||||||    
T  6003416 cctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaattcacaaaccaccggagcagacacct 6003329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 27993560 - 27993661
Alignment:
Q  139 aaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagaca 238  Q
    ||||||||||||| |||||||||||||||||||||| |||| ||||||| ||||| ||||||  || ||||||||||||||| |||||| |||||| |||    
T  27993560 aaaactagctcccgatctcgaatcaaaagtgatcggtccaccagactcccgacacaaatcataaagacacccctcaactcacgaaccaccagagcaaaca 27993659  T
Q  239 cc 240  Q
    ||    
T  27993660 cc 27993661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 46262119 - 46262224
Alignment:
Q  116 aaagcctaaaaggac-ataggcaaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctca 214  Q
    |||||||||||| || | || ||| |||||||||||| ||||||||||||||||||||||||||| |||||||  ||||||||||   ||||||||||||    
T  46262119 aaagcctaaaagaaccagagtcaagaaactagctcccgatctcgaatcaaaagtgatcggcccaccagactcccaacaccaatcaaaaaggcacccctca 46262218  T
Q  215 actcac 220  Q
    ||||||    
T  46262219 actcac 46262224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 25153362 - 25153197
Alignment:
Q  56 gcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaa--aaaactagctcccta 153  Q
    ||||||||||||||| ||||||||||| ||||| || ||||| | |||||||||| || || || ||||||| || || | ||  |||||| |||  | |    
T  25153362 gcttcaaacattcagattcgaccaccagtcaacttccggtctattggaggagacaccaaaatagtctaaaagaacctaagtaagaaaaactggctttcga 25153263  T
Q  154 tctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcac 220  Q
    ||||||||||||||||||||| |||| ||||||| ||||| ||||| ||| |||||||| |||||||    
T  25153262 tctcgaatcaaaagtgatcggtccaccagactcccgacacaaatca-ttaagcaccccttaactcac 25153197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 35206715 - 35206819
Alignment:
Q  137 aaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcaga 236  Q
    ||||||||||||||| |||||| |||||||||||||||||||| |||||||  |||| ||| |   ||| |||||||||||||  | |||| ||||||||    
T  35206715 aaaaaactagctcccgatctcggatcaaaagtgatcggcccaccagactcccaacacaaataaaaaagggacccctcaactcatgacccaccagagcaga 35206814  T
Q  237 cacct 241  Q
    |||||    
T  35206815 cacct 35206819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 241
Target Start/End: Original strand, 17802765 - 17802941
Alignment:
Q  66 ttcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaa-aagcctaaaaggacat-aggcaaaaaactagctccctatctcgaatca 163  Q
    ||||| ||||||||||| ||||| || |||||||||||| ||||| || || |||||||||| |||   || |||||| || ||| || |||||||||||    
T  17802765 ttcagattcgaccaccaatcaacttccggtctgtcggagaagacaccaaaataagcctaaaaagacccgagtcaaaaagctggcttccgatctcgaatca 17802864  T
Q  164 aaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
    |||||||||||||||| ||||     |||| |||||  ||||||||||||||||| | || ||| |||||| ||||||    
T  17802865 aaagtgatcggcccaccagaccggcaacacaaatca-ctaggcacccctcaactctcgaatcaccagagcatacacct 17802941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 3478412 - 3478369
Alignment:
Q  136 caaaaaactagctccctatctcgaatcaaaagtgatcggcccac 179  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||    
T  3478412 caaagaactaactcccgatctcgaatcaaaagtgatcggcccac 3478369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 2570201 - 2570115
Alignment:
Q  155 ctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
    ||||||||||||| |||  |||||| ||||||||||||| | |||   |||||||||||||||||| | | || |||||| ||||||    
T  2570201 ctcgaatcaaaagcgataagcccaccagactcctgacacaagtcaaaaaggcacccctcaactcacgagcaaccagagcaaacacct 2570115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 6584958 - 6584920
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  6584958 ctcccgatctcgaatcaaaagtgatcggcccaccagact 6584920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 9349798 - 9349760
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  9349798 ctcccgatctcgaatcaaaagtgatcggcccaccagact 9349760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 13311888 - 13311850
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  13311888 ctcccgatctcgaatcaaaagtgatcggcccaccagact 13311850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 34390011 - 34389973
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  34390011 ctcccgatctcgaatcaaaagtgatcggcccaccagact 34389973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 38306310 - 38306272
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  38306310 ctcccaatctcgaatcaaaagtgatcggcccaccagact 38306272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 38485605 - 38485567
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  38485605 ctcccgatctcgaatcaaaagtgatcggcccaccagact 38485567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 10244231 - 10244199
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccac 179  Q
    ||||| |||||||||||||||||||||||||||    
T  10244231 ctcccgatctcgaatcaaaagtgatcggcccac 10244199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 240
Target Start/End: Original strand, 7546451 - 7546554
Alignment:
Q  137 aaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcaga 236  Q
    |||||||||||| || |||||||||||||||||||||| |||| ||||||   |||||||| |   |||||||||||||||||| |||||| ||||||||    
T  7546451 aaaaaactagcttccgatctcgaatcaaaagtgatcggtccaccagactctcaacaccaataaaaaaggcacccctcaactcacgaaccaccagagcaga 7546550  T
Q  237 cacc 240  Q
    ||||    
T  7546551 cacc 7546554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 12129260 - 12129173
Alignment:
Q  153 atctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacct 241  Q
    |||||||||||||||||||||| |||  ||||| ||||||| ||| | | |||||||| ||||||||| | |||| |||| ||||||||    
T  12129260 atctcgaatcaaaagtgatcggaccatcagact-ctgacacaaattaataaggcacccatcaactcacgacccaccagagaagacacct 12129173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 16510339 - 16510371
Alignment:
Q  153 atctcgaatcaaaagtgatcggcccactagact 185  Q
    |||||||||||||||||||||||||||||||||    
T  16510339 atctcgaatcaaaagtgatcggcccactagact 16510371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 34105462 - 34105391
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactc 218  Q
    ||||| ||||||||||||||||||||||||||| | ||||  || || ||||| | |||||||| |||||||    
T  34105462 ctcccgatctcgaatcaaaagtgatcggcccaccaaactctagaaacaaatcactaaggcacccttcaactc 34105391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 26216051 - 26216089
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  26216051 ctcccgatctcgaatcaaaagtgatcggcccaccagact 26216089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 26534751 - 26534789
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  26534751 ctcccaatctcgaatcaaaagtgatcggcccaccagact 26534789  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 34092841 - 34092804
Alignment:
Q  150 cctatctcgaatcaaaagtgatcggcccactagactcc 187  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  34092841 cctatctcgaatcaaaagtgatcggctcaccagactcc 34092804  T

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Target: scaffold0068 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 35803 - 35841
Alignment:
Q  147 ctccctatctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  35803 ctcccgatctcgaatcaaaagtgatcggcccactagact 35841  T

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Target: scaffold0620 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 8175 - 8138
Alignment:
Q  150 cctatctcgaatcaaaagtgatcggcccactagactcc 187  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  8175 cctatctcgaatcaaaagtgatcggctcaccagactcc 8138  T

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Target: scaffold0200 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 19426 - 19394
Alignment:
Q  153 atctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||||||||||||||||||||||||| |||||    
T  19426 atctcgaatcaaaagtgatcggcccaccagact 19394  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 42176 - 42208
Alignment:
Q  153 atctcgaatcaaaagtgatcggcccactagact 185  Q
    ||||||||||||||||||||||||||| |||||    
T  42176 atctcgaatcaaaagtgatcggcccaccagact 42208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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