View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8223_high_13 (Length: 227)
Name: NF8223_high_13
Description: NF8223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8223_high_13 |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 9874 - 10070
Alignment:
| Q |
18 |
atcattattccaactttgatgtggattctctattcctaatttatttctgttttctgtaatnnnnnnnntagtggaataaagtgggcaaggaataacaatt |
117 |
Q |
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| T |
9874 |
atcattattccaactttgatgtggattctctattcctaatttatttctgttttctgtaataaaaaaaatcgtggaataaagtgggcaaggaataacaaat |
9973 |
T |
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| Q |
118 |
ttcctatacccacccacggtctatacatgaatggggggaaatcctcggatcaaaattattcttattttaattaggtttaagtctgacgagaataatat |
215 |
Q |
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| T |
9974 |
ttcctatacccacccacg-tctatacatgaatggggggaaatcctcggatcaaaattattcttattttaattaggtttaagtctgacgagaataatat |
10070 |
T |
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Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 18180869 - 18181065
Alignment:
| Q |
18 |
atcattattccaactttgatgtggattctctattcctaatttatttctgttttctgtaatnnnnnnnntagtggaataaagtgggcaaggaataacaatt |
117 |
Q |
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| T |
18180869 |
atcattattccaactttgatgtggattctctattcctaatttatttctgttttctgtaataaaaaaaatcgtggaataaagtgggcaaggaataacaaat |
18180968 |
T |
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| Q |
118 |
ttcctatacccacccacggtctatacatgaatggggggaaatcctcggatcaaaattattcttattttaattaggtttaagtctgacgagaataatat |
215 |
Q |
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| T |
18180969 |
ttcctatacccacccacg-tctatacatgaatggggggaaatcctcggatcaaaattattcttattttaattaggtttaagtctgacgagaataatat |
18181065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 37189524 - 37189616
Alignment:
| Q |
18 |
atcattattccaactttgatgtggattctctattcctaatttatttctgttttctgtaatnnnnnnnntagtggaataaagtgggcaaggaat |
110 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37189524 |
atcattattccaactttgatgtgaattctctattcctaatttatttctgttttctgtaataaaaaaaatagtggaataaagtgggcaaggaat |
37189616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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