View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8223_high_5 (Length: 337)
Name: NF8223_high_5
Description: NF8223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8223_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 1455866 - 1455549
Alignment:
| Q |
1 |
cctaagatccataaagcaagcagcaaacaaatatgttacgcaagtggaggacttgttatggtcacatgatgatgaagaaaaggaagagaactcagaaatt |
100 |
Q |
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| T |
1455866 |
cctaagatccataaagcaagcagcaaacaaatatgttacgcaagtggaggacttgttatggtcacatgatgatgaagaaaaggaagagaactcagaaatt |
1455767 |
T |
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| Q |
101 |
tccctctcagatgatgtgtgggtgatttgcccattcaatgattgttcaattttgatgagttttgatgggcttgaaatcgtgacaaaagccgagtgcccgt |
200 |
Q |
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| T |
1455766 |
tccctctcagatgatgtgtgggtgatttgtccattcaatgattgttcaattttgatgagttttgatgggcttgaaatcgtgacaaaagccgagtgcccgt |
1455667 |
T |
|
| Q |
201 |
catgtcacaggttattttgcgtacaatgtaaagttccatggcatgaaggactcaactgtcaacaatttcaacgaaaactagcatgctccaataaaacata |
300 |
Q |
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| T |
1455666 |
catgtcacatgttattttgcgtacaatgtaaagttccatggcatgaaggactcaactgtcaacaatttcaacgaaaactagcatgttccaataaaacata |
1455567 |
T |
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| Q |
301 |
catgattgttgattccca |
318 |
Q |
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| T |
1455566 |
catgattgttgattccca |
1455549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 33532361 - 33532321
Alignment:
| Q |
203 |
tgtcacaggttattttgcgtacaatgtaaagttccatggca |
243 |
Q |
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| T |
33532361 |
tgtcataggttattttgtgtgcaatgtaaagttccatggca |
33532321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 16868986 - 16869026
Alignment:
| Q |
203 |
tgtcacaggttattttgcgtacaatgtaaagttccatggca |
243 |
Q |
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| T |
16868986 |
tgtcataggttattttgtgtgcaatgtaaagttccatggca |
16869026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 19314957 - 19314989
Alignment:
| Q |
223 |
acaatgtaaagttccatggcatgaaggactcaa |
255 |
Q |
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| T |
19314957 |
acaatgtaaagttccatggcatgaaggattcaa |
19314989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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