View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8223_high_6 (Length: 286)
Name: NF8223_high_6
Description: NF8223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8223_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 39956619 - 39956361
Alignment:
| Q |
20 |
atttcaacaatctcagcagcaccaactacattaccagaagctcctctcttttctcctgcaatgtcaccagatatggagccactgtttccttcccctggag |
119 |
Q |
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| T |
39956619 |
atttcaacaatctcagcagcaccaactacattaccagaagctcctctcttttctcctgcaatgtcaccagatatggagccactgtttccttcccctggag |
39956520 |
T |
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| Q |
120 |
gagttgcttactctccatcggattcttcattaccaacaattccttcaagtcctagccctccaaatccagatatctcaactcatcaaggtcctgtttcggc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956519 |
gagttgcttactctccatcggattcttcattaccaacaattccttcaagtcctagccctccaaatccagatatctcaactcatcaaggtcctgtttcggc |
39956420 |
T |
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| Q |
220 |
ttttccaccatccgagtctatgccaccggctttaggcccttcttctcagggttcatctc |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956419 |
ttttccaccatccgagtctatgccaccggctttaggcccttcttctcagggttcatctc |
39956361 |
T |
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