View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8223_high_9 (Length: 251)
Name: NF8223_high_9
Description: NF8223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8223_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 245
Target Start/End: Original strand, 1903204 - 1903450
Alignment:
| Q |
2 |
taatttgatgaaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgcctt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1903204 |
taatttgatgaaatggaaaagattggatgtaacatgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgcctt |
1903303 |
T |
|
| Q |
102 |
caatgtgaagtatcggtcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatgaaatattttttca-------ttatttaatga |
194 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1903304 |
caatgtgaagta----tcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatgaaatattttttcatttcttgttatttaatga |
1903399 |
T |
|
| Q |
195 |
gatcatcaaaattttagtactgaaaagtttaagttcgtttattcatctcac |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
1903400 |
gatcatcaaaattttagtactgaaaagtttcagttcctttattcatttcac |
1903450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 245
Target Start/End: Original strand, 1907437 - 1907683
Alignment:
| Q |
2 |
taatttgatgaaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgcctt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1907437 |
taatttgatgaaatggaaaagattggatgtaacatgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgcctt |
1907536 |
T |
|
| Q |
102 |
caatgtgaagtatcggtcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatgaaatattttttca-------ttatttaatga |
194 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1907537 |
caatgtgaagta----tcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatgaaatattttttcatttcttgttatttaatga |
1907632 |
T |
|
| Q |
195 |
gatcatcaaaattttagtactgaaaagtttaagttcgtttattcatctcac |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
1907633 |
gatcatcaaaattttagtactgaaaagtttcagttcctttattcatttcac |
1907683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 1897876 - 1898006
Alignment:
| Q |
12 |
aaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgccttcaatgtgaag |
111 |
Q |
| |
|
||||||||| ||||| || ||||| ||||||||||||| ||||||||||||||||| ||| || | ||||| |||||||||||| |||||| ||||| |
|
|
| T |
1897876 |
aaatggaaatgattgaatttaacatgcatgtctatgtccgacaccagcacgtgccagacatcgatacatgttggacactgaacacgttttcaatatgaag |
1897975 |
T |
|
| Q |
112 |
tatcggtcggtgctgcatagtatttactagaatgt |
146 |
Q |
| |
|
|| || ||||| |||||||||||||||||||| |
|
|
| T |
1897976 |
ta----tcagtgctacatagtatttactagaatgt |
1898006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 1898089 - 1898150
Alignment:
| Q |
184 |
ttatttaatgagatcatcaaaattttagtactgaaaagtttaagttcgtttattcatctcac |
245 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
1898089 |
ttatttaatgggatcatcaaaattttagtactgaaaagtttcagttcctttattcatttcac |
1898150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University