View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8223_low_1 (Length: 799)
Name: NF8223_low_1
Description: NF8223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8223_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 668; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 8 - 687
Target Start/End: Original strand, 41129139 - 41129818
Alignment:
| Q |
8 |
gtagataatactaattgttcacttgttgtagttgtagcagcaccctcattaacctcaagcataaaatcctgttgttgaataaattccttgagattttgta |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41129139 |
gtagatactactaattgttcacttgttgtagttgtagcagcaccctcattaacctcaagcataaaatcctgttgttgaataaattccttgagattttgta |
41129238 |
T |
|
| Q |
108 |
ttaattgtgactcaaactccgcaggattcccaagcacatcattgtaaccgcgtcttgcaacacatcgaaatattctatactctcttggttccacttgccg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41129239 |
ttaattgtgactcaaactccgcaggattcccaagcacatcattgtaaccgcgtcttgcaacacatcgaaatattctatactctcttggttccacttgccg |
41129338 |
T |
|
| Q |
208 |
aaacaaaaacctctcttccaaagcaactctattaaccggaattgtcttgatagaaacgaacacaacaactgaatgaatggatggtacgctagctataaag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41129339 |
aaacaaaaacctctcttccaaagcaactctattaaccggaattgtcttgatagaaacgaacacaacaactgaatgaatggatggtacgctagctataaag |
41129438 |
T |
|
| Q |
308 |
tgcggaaatattggaggaattccttgtacaagctcggaatacaaaagtccaattccgggcactctgtgtacatctgttctgtttgacaattccctcaaat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41129439 |
tgcggaaatattggaggaattccttgtacaagctcggaatacaaaagtccaattccaggcactctgtgtacatctgttctgtttgccaattccctcaaat |
41129538 |
T |
|
| Q |
408 |
actcggtagagactttgtttttgagttcaaacatgtatctttctttgtgaacgtaatgccaaattcccataaccattgtcaagaacatagctagtacaat |
507 |
Q |
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| T |
41129539 |
actcggtagagactttgtttttgagttcaaacatgtatctttctttgtgaacgtaatgccaaattcccataaccattgtcaagaacatagctagtacaat |
41129638 |
T |
|
| Q |
508 |
tggaaaatatcctccttttgaaaacttggttatttgagatgagaaataaagaatctctatgaaaccaaatacaaaaaagaaaaggctaaccatccataaa |
607 |
Q |
| |
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| T |
41129639 |
tggaaaatatcctccttttgaaaacttggttatttgagatgagaaataaagaatctctatgaaaccaaatacaaaaaagaaaaggctaaccatccataaa |
41129738 |
T |
|
| Q |
608 |
ctctttttccatataacaagcattataagtgaaactagtgttgttgtgatcaacatatcaccaataacagcaatccctgc |
687 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41129739 |
ctctttttccatataacaagcattataagtgaaactagtgttgttgtgatcaacatatcaccaataacagcaatccctgc |
41129818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 85 - 368
Target Start/End: Complemental strand, 7801957 - 7801674
Alignment:
| Q |
85 |
aataaattccttgagattttgtattaattgtgactcaaactccgcaggattcccaagcacatcattgtaaccgcgtcttgcaacacatcgaaatattcta |
184 |
Q |
| |
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|||||||||||| |||| ||| | ||||| |||||||||||| || || |||| ||||| |||||||| | ||| ||| || ||||||||| | |
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| T |
7801957 |
aataaattcctttagatgttgcaccaattgagactcaaactccatagaatctccaattacatcgttgtaaccatgccttacaatgcaacgaaatattttc |
7801858 |
T |
|
| Q |
185 |
tactctcttggttccacttgccgaaacaaaaacctctcttccaaagcaactctattaaccggaattgtcttgatagaaacgaacacaacaactgaatgaa |
284 |
Q |
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| |||||||| ||||| || |||| | |||| |||||||||| ||||| ||| ||| ||||||| ||| || ||||| || |||||||||||||||| |
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| T |
7801857 |
cattctcttggctccacatgttgaaatagaaacttctcttccaatgcaacactagtaattggaattgccttaatggaaacaaatacaacaactgaatgaa |
7801758 |
T |
|
| Q |
285 |
tggatggtacgctagctataaagtgcggaaatattggaggaattccttgtacaagctcggaatacaaaagtccaattccgggca |
368 |
Q |
| |
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| | ||||| | | || || ||||| | ||||||||||||||||||||||| ||||| ||||||||| ||||||||| |||| |
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| T |
7801757 |
tagttggtatgttggcaatgaagtgaaggaatattggaggaattccttgtactagctcacaatacaaaactccaattccaggca |
7801674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 7801639 - 7801589
Alignment:
| Q |
403 |
caaatactcggtagagactttgtttttgagttcaaacatgtatctttcttt |
453 |
Q |
| |
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||||||||||| ||||||||| || ||||||||||||||||| |||||||| |
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| T |
7801639 |
caaatactcggaagagactttattcttgagttcaaacatgtacctttcttt |
7801589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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