View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8223_low_12 (Length: 271)
Name: NF8223_low_12
Description: NF8223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8223_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 28614883 - 28614656
Alignment:
| Q |
19 |
aactcatgcatcatccaatcagttttggtgccttttccggcactaccgcgatagtaaacaagtgnnnnnnngagtccaacacaatcatttccttctgctc |
118 |
Q |
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| T |
28614883 |
aactcatgcatcatccaatcagttttggtgccttttccggcactaccacgatagtaaacaagtgtttttttgagtccaacacaatcatttccttctgctc |
28614784 |
T |
|
| Q |
119 |
catttgagtaaattggtttgtctattccagttgctttccaaaatccagagccagtcactctatttggcctaacgctgttcctatattttcttcctctttg |
218 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28614783 |
catttgagtaaattgctttgtctattccagttgctttccagaatccagagccagtcactctatttggcctaacgctgttcctatattttcttcctctttg |
28614684 |
T |
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| Q |
219 |
gcaaaaatagtaaccttccttctctgct |
246 |
Q |
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||||||| ||||||||||||| |||||| |
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| T |
28614683 |
gcaaaaaaagtaaccttccttttctgct |
28614656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 28629408 - 28629181
Alignment:
| Q |
19 |
aactcatgcatcatccaatcagttttggtgccttttccggcactaccgcgatagtaaacaagtgnnnnnnngagtccaacacaatcatttccttctgctc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28629408 |
aactcatgcatcatccaatcagttttggtgccttttccggcactaccgcgatagtaaacaagtgtttttttgagtccaacacaatcatttccttctgctc |
28629309 |
T |
|
| Q |
119 |
catttgagtaaattggtttgtctattccagttgctttccaaaatccagagccagtcactctatttggcctaacgctgttcctatattttcttcctctttg |
218 |
Q |
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|||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28629308 |
catttgagtatattgctttgtctattccagttgctttccagaatccagagccagtcactctatttggtctaacgctgttcctatattttcttcctctttg |
28629209 |
T |
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| Q |
219 |
gcaaaaatagtaaccttccttctctgct |
246 |
Q |
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||||||| |||||||||||||||||||| |
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| T |
28629208 |
gcaaaaaaagtaaccttccttctctgct |
28629181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 33727930 - 33727878
Alignment:
| Q |
136 |
ttgtctattccagttgctttccaaaatccagagccagtcactctatttggcct |
188 |
Q |
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|||||| ||||||||||||||||| | ||||| |||| |||||||||||||| |
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| T |
33727930 |
ttgtctgttccagttgctttccaatacccagatccagctactctatttggcct |
33727878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 39633562 - 39633497
Alignment:
| Q |
151 |
gctttccaaaatccagagccagtcactctatttggcctaacgctgttcctatattttcttcctctt |
216 |
Q |
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||||||||||||||||| || ||||||||||| ||||| | ||||||||||||||||||||||||| |
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| T |
39633562 |
gctttccaaaatccagatcctgtcactctattaggccttatgctgttcctatattttcttcctctt |
39633497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 39633688 - 39633648
Alignment:
| Q |
22 |
tcatgcatcatccaatcagttttggtgccttttccggcact |
62 |
Q |
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|||||||||||||||||||||||||||||||| || ||||| |
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| T |
39633688 |
tcatgcatcatccaatcagttttggtgcctttccctgcact |
39633648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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