View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8223_low_15 (Length: 248)
Name: NF8223_low_15
Description: NF8223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8223_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 9985667 - 9985899
Alignment:
| Q |
1 |
tttattattactaattaatacaactattaatatttatggnnnnnnnaatatttttctaatgaagttatttctaacatgttaagtatcaatagttaaatat |
100 |
Q |
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| T |
9985667 |
tttattattactaattaatacaactattaatatttatggtttttttaatatttttctaatgaagttatttctaacatgttaagtatcaatagttaaatat |
9985766 |
T |
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| Q |
101 |
gtttttcatctctatnnnnnnnnnnntaaactttcatgtttttgtttcct-taatgtcatttattttttggtagatagatgaaatgataaataacaattg |
199 |
Q |
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| T |
9985767 |
gtttttcatctctat-aaaaaaaatataaactttcatgtttttgtttcctcaaatttcatttagtttttggtagatagatgaaatgataaataacaattg |
9985865 |
T |
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| Q |
200 |
aaactctcacacgtacaagtagatgggttgatgt |
233 |
Q |
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| T |
9985866 |
aaactctcacacacacaaatagatgggtcgatgt |
9985899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 29016481 - 29016434
Alignment:
| Q |
163 |
ttttttggtagatagatgaaatgataaataacaattgaaactctcaca |
210 |
Q |
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|||||||||||||||| ||||||| ||||||| |||||||||| |||| |
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| T |
29016481 |
ttttttggtagatagacgaaatgacaaataaccattgaaactcacaca |
29016434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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