View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8223_low_17 (Length: 236)
Name: NF8223_low_17
Description: NF8223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8223_low_17 |
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| [»] scaffold0536 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 48951739 - 48951959
Alignment:
| Q |
1 |
actcttttccatccagctccgcaaagctattgatgatgaagccatcgcttttgagcgctacagtgagcagaggatccataaaagacttggactccaaggg |
100 |
Q |
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| T |
48951739 |
actcttttccatccagctccacaaagctattgatgatgaagccatcgcttttgagcgctacggtgagcagaggatccataaaagacttggactccaaggg |
48951838 |
T |
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| Q |
101 |
tggtgttgaattaatgacaatgtcgtaaggaaaattcggaataacaaaagaaccagaagcatcctcagggagagggtgtgatttgagggattccatggca |
200 |
Q |
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| T |
48951839 |
tggtgttgaattaatgacaatatcgtaaggaaaattcggaataacaaaagaaccagaagcatcctcagggagagggtgcaatttgagggattccatggca |
48951938 |
T |
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| Q |
201 |
catatggtaaagagtgagaaa |
221 |
Q |
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| T |
48951939 |
catatggtaaagagtgagaaa |
48951959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 48974784 - 48974819
Alignment:
| Q |
186 |
agggattccatggcacatatggtaaagagtgagaaa |
221 |
Q |
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| T |
48974784 |
agggattccatggcacatatggcaaagagtgagaaa |
48974819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1136 - 916
Alignment:
| Q |
1 |
actcttttccatccagctccgcaaagctattgatgatgaagccatcgcttttgagcgctacagtgagcagaggatccataaaagacttggactccaaggg |
100 |
Q |
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| T |
1136 |
actcttctccatcgagctctacaaagctgttgatgatgaaaccatggcttttaagggctatagtgagtagcggatcaatgaatgattttgactccgcagg |
1037 |
T |
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| Q |
101 |
tggtgttgaattaatgacaatgtcgtaaggaaaattcggaataacaaaagaaccagaagcatcctcagggagagggtgtgatttgagggattccatggca |
200 |
Q |
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| T |
1036 |
tggttttgaattaatgatgatatcgtaaggaaaattcggaataacaaaagaaccagaagcatcctcagggagaggttgtgatttaagggattccatggca |
937 |
T |
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| Q |
201 |
catatggtaaagagtgagaaa |
221 |
Q |
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| T |
936 |
catatggtaaatagtgagaaa |
916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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