View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8223_low_2 (Length: 530)
Name: NF8223_low_2
Description: NF8223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8223_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 4e-70; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 31737941 - 31737791
Alignment:
| Q |
69 |
tgatgtatgaattatgaaccgtgaaaataactgttcggtttgcctagttgagccaacacattctacacaatagacttctcagctaattggttgaaaacaa |
168 |
Q |
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| T |
31737941 |
tgatgtatgaattatgaaccgtgaaaataactgttcggcttgcctggttgagccaccacattctacacaatagacttctcagctaattggttgaaaacaa |
31737842 |
T |
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| Q |
169 |
atgttgaatgtaacagtggcataaaaggaaattattcgattaactttgggg |
219 |
Q |
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| T |
31737841 |
atgttgaatgtaacaatggcataaaaggaaattattcgattaactttgggg |
31737791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 414 - 530
Target Start/End: Complemental strand, 31737668 - 31737552
Alignment:
| Q |
414 |
aagatttttattaccattgcggtagtctatcatttgaaagggatccaaagtccatggtttttacctcagacaaaaataagttaatcaatactagaccagt |
513 |
Q |
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| T |
31737668 |
aagatttttattaccattgcggtagtctatcatttgaaagtgatccaaagtccatggtttttacctcagacaaaaataagtgaatcaatactagaccagt |
31737569 |
T |
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| Q |
514 |
ccagaataatatagcca |
530 |
Q |
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| T |
31737568 |
ccagaagagtatagcca |
31737552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 31707676 - 31707591
Alignment:
| Q |
69 |
tgatgtatgaattatgaaccgtgaaaataactgttcggtttgcctagttgagccaacacattctacacaatagacttctcagctaa |
154 |
Q |
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| T |
31707676 |
tgatgcatgaattatgaaccgtgaaaatgactgttcagcttgcctagttgagccaccacattctacacaatagacttctcagctaa |
31707591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 414 - 518
Target Start/End: Complemental strand, 31703285 - 31703182
Alignment:
| Q |
414 |
aagatttttattaccattgcggtagtctatcatttgaaagggatccaaagtccatggtttttacctcagacaaaaataagttaatcaatactagaccagt |
513 |
Q |
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||||||||||||||| | || |||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
31703285 |
aagatttttattaccgtcacgatagtctatcattggaaagtgatccaaagtccatagtttttacctcggacaaaaataagttaatcaatactaga-cagt |
31703187 |
T |
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| Q |
514 |
ccaga |
518 |
Q |
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||||| |
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| T |
31703186 |
ccaga |
31703182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 324 - 416
Target Start/End: Complemental strand, 31737791 - 31737700
Alignment:
| Q |
324 |
gaacacctaagtagggcattagaagcnnnnnnnntgatcgattttgccctgatattacattagtttatagtaccaatacaaaattttattaag |
416 |
Q |
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| T |
31737791 |
gaacacctaagtagggcattagaagcaaaaaaa-tgatcgattttgccctgatattacattagtttatagtaccaatacaaaattttattaag |
31737700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 326
Target Start/End: Complemental strand, 31703580 - 31703498
Alignment:
| Q |
243 |
atcgaggtatgaacctatcgaaagaggatagaaactgagcgatccaagagcaagatgcgattgcatatgggctaagatggagaa |
326 |
Q |
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| T |
31703580 |
atcgaggtatggaccaatcgaaagaagagagaaaccgagtgatccaagagcaagacacgatcacatat-ggctaagatggagaa |
31703498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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