View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8223_low_4 (Length: 474)
Name: NF8223_low_4
Description: NF8223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8223_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 316
Target Start/End: Original strand, 32924042 - 32924344
Alignment:
| Q |
14 |
aatatattgatttctcataacatttataccatgcatgcctaatatattaagggattttaatttctgtcttccagttacttgcactttgggagagaagcat |
113 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| |||||||||| |
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| T |
32924042 |
aatatattgatttctcataacatttatacgatgcatgcctaatatattaagggcttttaatttctgtctgccagttacttacactttggtagagaagcat |
32924141 |
T |
|
| Q |
114 |
ctcgagcagagattttgaaggtcactcataattctcccaacccttgcattttagctggatttgatggtaaacacaagtttgtttcacaagttattgaagt |
213 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32924142 |
ctcgagcagagattttgaaggtcacacataattctcccaacccttgcattttagctggatttgatggtaaacacaagttattttcacaagttattgaagt |
32924241 |
T |
|
| Q |
214 |
tttaagttgtttgttgaaacttaatatatgctaattatttaagagattaagttggctgaaacaactctcggtctagccgatcgttaggtcaggtatcgag |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32924242 |
tttaagttgtttgttgaaacttaatatatgctaattatttaagagattaagttggctgaaacaactctcggtctagccgatcgttaggtcaggtaccgag |
32924341 |
T |
|
| Q |
314 |
ttt |
316 |
Q |
| |
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||| |
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|
| T |
32924342 |
ttt |
32924344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 80 - 224
Target Start/End: Original strand, 32912146 - 32912290
Alignment:
| Q |
80 |
tcttccagttacttgcactttgggagagaagcatctcgagcagagattttgaaggtcactcataattctcccaacccttgcattttagctggatttgatg |
179 |
Q |
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|||| ||||||||| |||||||| ||||||||||||||||| |||||| |||||||||||| || |||||| ||||||||| |||||||||||||||||| |
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| T |
32912146 |
tctttcagttacttacactttggtagagaagcatctcgagctgagattatgaaggtcactcgtagttctcctaacccttgccttttagctggatttgatg |
32912245 |
T |
|
| Q |
180 |
gtaaacacaagtttgtttcacaagttattgaagttttaagttgtt |
224 |
Q |
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| T |
32912246 |
gtaaacacaagtttgtttcacaagttattgaagtttcaaattgtt |
32912290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 360 - 461
Target Start/End: Original strand, 32924384 - 32924485
Alignment:
| Q |
360 |
ctaatatggtcgattttcgatttcacttttttaacattgcaatttttagaattaataacaaatgttctgtttttcaaagggacatacacatatgccggag |
459 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32924384 |
ctaatatggtcgattttcgatttcacttttttaatattgcaatttttagaattaataacaaatgttctgtttttcaaagggacatacacatatgctggag |
32924483 |
T |
|
| Q |
460 |
aa |
461 |
Q |
| |
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|| |
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|
| T |
32924484 |
aa |
32924485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 32942765 - 32942873
Alignment:
| Q |
80 |
tcttccagttacttgcactttgggagagaagcatctcgagcagagattttgaaggtcactcataattctcccaacccttgcattttagctggatttgatg |
179 |
Q |
| |
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|||| |||||| |||| ||||| | |||||||||||| || || |||||||| |||||| || |||||| || ||||||||||||||||| | | ||| |
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| T |
32942765 |
tctttcagttatttgcggtttggcaaagaagcatctcgtgctgaaattttgaaagtcactaatggttctcctaatccttgcattttagctggctatcatg |
32942864 |
T |
|
| Q |
180 |
gtaaacaca |
188 |
Q |
| |
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||||||||| |
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| T |
32942865 |
gtaaacaca |
32942873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 32949946 - 32950054
Alignment:
| Q |
80 |
tcttccagttacttgcactttgggagagaagcatctcgagcagagattttgaaggtcactcataattctcccaacccttgcattttagctggatttgatg |
179 |
Q |
| |
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|||| |||||| |||| ||||| | |||||||||||| || || |||||||| |||||| || |||||| || ||||||||||||||||| | | ||| |
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| T |
32949946 |
tctttcagttatttgcggtttggcaaagaagcatctcgtgctgaaattttgaaagtcactaatggttctcctaatccttgcattttagctggctatcatg |
32950045 |
T |
|
| Q |
180 |
gtaaacaca |
188 |
Q |
| |
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||||||||| |
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|
| T |
32950046 |
gtaaacaca |
32950054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 11824528 - 11824691
Alignment:
| Q |
25 |
ttctcataacatttataccatgcatgcctaatatattaagggattttaatttctgtcttccagttacttgcactttgggagagaagcatctcgagcagag |
124 |
Q |
| |
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|||||||||||| ||||||||| |||||||| ||||| | | |||| |||| |||||||||||||| |||||||| | |||||||||||| || ||| |
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| T |
11824528 |
ttctcataacatatataccatg----cctaatattttaagagctcttaacttctttcttccagttacttacactttggtacagaagcatctcgggctgag |
11824623 |
T |
|
| Q |
125 |
attttgaaggtcactcataattctcccaacccttgcattttagctggatttgatggtaaacacaagtt |
192 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11824624 |
attttgaaggtcactcataattctcctaacccttgcattttagctggatttgatggtaaatacaagtt |
11824691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 461
Target Start/End: Original strand, 11824778 - 11824826
Alignment:
| Q |
413 |
aataacaaatgttctgtttttcaaagggacatacacatatgccggagaa |
461 |
Q |
| |
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|||||||||| || ||||||| ||||||||||||| |||||| |||||| |
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| T |
11824778 |
aataacaaatattttgtttttgaaagggacatacagatatgctggagaa |
11824826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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