View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8223_low_5 (Length: 424)

Name: NF8223_low_5
Description: NF8223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8223_low_5
NF8223_low_5
[»] chr7 (3 HSPs)
chr7 (13-186)||(12489708-12489881)
chr7 (248-388)||(12489506-12489646)
chr7 (287-368)||(43016430-43016510)
[»] chr3 (1 HSPs)
chr3 (248-368)||(35495300-35495422)
[»] chr2 (5 HSPs)
chr2 (248-368)||(11361754-11361876)
chr2 (13-127)||(11361509-11361627)
chr2 (304-339)||(5568381-5568416)
chr2 (327-369)||(17641379-17641421)
chr2 (304-340)||(6408348-6408384)
[»] chr1 (4 HSPs)
chr1 (14-138)||(31123455-31123583)
chr1 (248-368)||(31123246-31123368)
chr1 (310-369)||(29321937-29321996)
chr1 (288-367)||(29500387-29500464)
[»] chr4 (2 HSPs)
chr4 (248-368)||(23112122-23112241)
chr4 (304-367)||(32179285-32179343)
[»] chr8 (2 HSPs)
chr8 (269-368)||(40499433-40499535)
chr8 (264-316)||(39037401-39037456)
[»] chr6 (1 HSPs)
chr6 (288-367)||(14526853-14526933)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 12489881 - 12489708
Alignment:
Q  13 gacatcagatctagaatacaaaccaaaacacatggaggtggtaacaaacgaagacgatgaagaagaaagagttgtgattcggttgtggtagttgatggag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12489881 gacatcagatctagaatacaaaccaaaacacatggaggtggtaacaaacgaagacgatgaagaagaaggagttgtgattcggttgtggtagttgatggag 12489782  T
Q  113 gtgacaaaacgatggcgatggagatgaagttgcaattcggtatagccgacggcgtcgacggcaacagtgaggcc 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12489781 gtgacaaaacgatggcgatggagatgaagttgcaattcggtatagccgacggcgtcgacggcaacagtgaggcc 12489708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 248 - 388
Target Start/End: Complemental strand, 12489646 - 12489506
Alignment:
Q  248 ttgtgtagttgtgagtgaaattaccaaactacctattgcatgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaaag 347  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  12489646 ttgtgtggttgtgagtgaaattaccaaactacctattgcatgaaattaccaaactacccctgccacatcagcagtggtacaaaggggtgtatattaaaag 12489547  T
Q  348 tggtctatgtatctttttccttcaacaaacttccaccttac 388  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12489546 tggtctatgtatctttttccttcaacaaacttccaccttac 12489506  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 368
Target Start/End: Complemental strand, 43016510 - 43016430
Alignment:
Q  287 atgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaaagtggtctatgtatctttttcct 368  Q
    ||||||||| ||| |||||| |||||||||||||| ||||||||| || ||| |  ||  ||||||||||||||||||||||    
T  43016510 atgaaattagcaatctacccctgccacatcagcagtggtacaaagtgg-gtacacaaatggtggtctatgtatctttttcct 43016430  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 248 - 368
Target Start/End: Complemental strand, 35495422 - 35495300
Alignment:
Q  248 ttgtgtagttgtgagtgaaattaccaaactacct--attgcatgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaa 345  Q
    |||||| ||||| ||||||| |||||||||||||  ||||||||||||||||||||||||| | |||||||||||| ||| |||||||||||||||| |     
T  35495422 ttgtgtggttgtaagtgaaactaccaaactacctctattgcatgaaattaccaaactacccctaccacatcagcagtggtgcaaaggggtgtatattgag 35495323  T
Q  346 agtggtctatgtatctttttcct 368  Q
    |||||||| ||||||||||||||    
T  35495322 agtggtctctgtatctttttcct 35495300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 248 - 368
Target Start/End: Original strand, 11361754 - 11361876
Alignment:
Q  248 ttgtgtagttgtgagtgaaattaccaaactacc--tattgcatgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaa 345  Q
    |||||| ||||||||||||| || |||||||||  |||||| ||||| |||||||||  || |||||||||||||| |||| ||||||||| ||||||||    
T  11361754 ttgtgtggttgtgagtgaaactatcaaactacccatattgcgtgaaactaccaaactgtccctgccacatcagcagtggtataaaggggtggatattaaa 11361853  T
Q  346 agtggtctatgtatctttttcct 368  Q
    |||||||||||||||||||||||    
T  11361854 agtggtctatgtatctttttcct 11361876  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 11361509 - 11361627
Alignment:
Q  13 gacatcagatctagaatacaaaccaaaacacatggaggtggt----aacaaacgaagacgatgaagaagaaagagttgtgattcggttgtggtagttgat 108  Q
    ||||||||||||||||| ||||||||||| ||||||||||||     |||||||| ||||||||| ||||| ||||| |||||||||||||| |||||||    
T  11361509 gacatcagatctagaatgcaaaccaaaacgcatggaggtggtgatggacaaacgacgacgatgaaaaagaaggagttatgattcggttgtgggagttgat 11361608  T
Q  109 ggaggtgacaaaacgatgg 127  Q
    |||||||||| ||||||||    
T  11361609 ggaggtgacagaacgatgg 11361627  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 339
Target Start/End: Original strand, 5568381 - 5568416
Alignment:
Q  304 cccttgccacatcagcagcggtacaaaggggtgtat 339  Q
    |||||||||||||||||| |||||||||||||||||    
T  5568381 cccttgccacatcagcagtggtacaaaggggtgtat 5568416  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 17641421 - 17641379
Alignment:
Q  327 caaaggggtgtatattaaaagtggtctatgtatctttttcctt 369  Q
    ||||||||||||||  || ||||||||||||||||||||||||    
T  17641421 caaaggggtgtatagaaagagtggtctatgtatctttttcctt 17641379  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 6408348 - 6408384
Alignment:
Q  304 cccttgccacatcagcagcggtacaaaggggtgtata 340  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  6408348 cccttgccacatgagcagtggtacaaaggggtgtata 6408384  T

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Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 31123583 - 31123455
Alignment:
Q  14 acatcagatctagaatacaaaccaaaacacatggaggtggtaa----caaacgaagacgatgaagaagaaagagttgtgattcggttgtggtagttgatg 109  Q
    |||||||||||||||| ||||||||||  |||||||||||| |    ||||||| |  ||||||||||||  | ||||||||||||||||| ||||||||    
T  31123583 acatcagatctagaatgcaaaccaaaatgcatggaggtggtgatggacaaacgacggtgatgaagaagaagaatttgtgattcggttgtgggagttgatg 31123484  T
Q  110 gaggtgacaaaacgatggcgatggagatg 138  Q
    ||||||||| |||||||||||||||||||    
T  31123483 gaggtgacagaacgatggcgatggagatg 31123455  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 248 - 368
Target Start/End: Complemental strand, 31123368 - 31123246
Alignment:
Q  248 ttgtgtagttgtgagtgaaattaccaaactacc--tattgcatgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaa 345  Q
    |||||| ||||||| ||||| ||||||||||||  |||||  ||||||||||||||||||  |||||||||||||| | |||||||| ||||| |   |     
T  31123368 ttgtgtggttgtgaatgaaactaccaaactacccctattgtgtgaaattaccaaactacctctgccacatcagcagtgatacaaaggagtgtaaacatag 31123269  T
Q  346 agtggtctatgtatctttttcct 368  Q
    |||||||||  ||||||||||||    
T  31123268 agtggtctacctatctttttcct 31123246  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 369
Target Start/End: Complemental strand, 29321996 - 29321937
Alignment:
Q  310 ccacatcagcagcggtacaaaggggtgtatattaaaagtggtctatgtatctttttcctt 369  Q
    |||||||||||| |||| |||||||||||||  || |||||| | |||||||||||||||    
T  29321996 ccacatcagcagtggtagaaaggggtgtatagaaagagtggtttgtgtatctttttcctt 29321937  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 29500387 - 29500464
Alignment:
Q  288 tgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaa-agtggtctatgtatctttttcc 367  Q
    ||||||||||||||||||| |||||||||||    ||||||||| | |||||   ||| ||||||||||||||||||||||    
T  29500387 tgaaattaccaaactacccctgccacatcagt---ggtacaaagagatgtatggaaaagagtggtctatgtatctttttcc 29500464  T

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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 248 - 368
Target Start/End: Complemental strand, 23112241 - 23112122
Alignment:
Q  248 ttgtgtagttgtgagtgaaattaccaaactacct--attgcatgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaa 345  Q
    |||||| ||||| ||||||| |||||||||||||  ||||| |||||||| ||||| |||| | |||||||||||| ||||||||||   ||||||| |     
T  23112241 ttgtgtggttgtaagtgaaactaccaaactacctctattgcgtgaaattatcaaaccacccctaccacatcagcagtggtacaaagg---gtatattgag 23112145  T
Q  346 agtggtctatgtatctttttcct 368  Q
    |||||||||||||||||||||||    
T  23112144 agtggtctatgtatctttttcct 23112122  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 367
Target Start/End: Original strand, 32179285 - 32179343
Alignment:
Q  304 cccttgccacatcagcagcggtacaaaggggtgtatattaaaagtggtctatgtatctttttcc 367  Q
    |||||||||||||||||| ||||||||||||||     ||  ||||||||||||||||||||||    
T  32179285 cccttgccacatcagcagtggtacaaaggggtg-----tacgagtggtctatgtatctttttcc 32179343  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 368
Target Start/End: Complemental strand, 40499535 - 40499433
Alignment:
Q  269 taccaaacta--cctattgcatgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaa-agtggtctatgtatcttttt 365  Q
    ||||||||||  ||||| || |||||||| |||||||||| |||||||||||||| ||| |||||||| |||||  ||| ||||||||||||||||||||    
T  40499535 taccaaactatccctatcgcgtgaaattatcaaactacccctgccacatcagcagtggtgcaaaggggcgtatagaaaagagtggtctatgtatcttttt 40499436  T
Q  366 cct 368  Q
    |||    
T  40499435 cct 40499433  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 39037401 - 39037456
Alignment:
Q  264 gaaattaccaaactacc---tattgcatgaaattaccaaactacccttgccacatc 316  Q
    |||| ||||||||||||   ||| || |||||||||||||||||||||||||||||    
T  39037401 gaaactaccaaactaccccttatcgcgtgaaattaccaaactacccttgccacatc 39037456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 14526853 - 14526933
Alignment:
Q  288 tgaaattaccaaactacccttgccacatcagcagcggtacaaaggggtgtatattaaa-agtggtctatgtatctttttcc 367  Q
    ||||||||||||||||||| ||  |||||| ||  ||||||||||||||||||  ||| ||||||||||||||||||||||    
T  14526853 tgaaattaccaaactacccctgtaacatcaacactggtacaaaggggtgtatagaaaagagtggtctatgtatctttttcc 14526933  T

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