View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8223_low_6 (Length: 389)
Name: NF8223_low_6
Description: NF8223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8223_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 36268689 - 36269067
Alignment:
| Q |
1 |
attattgactgctactttcaagcaacctcatacgctacttc-aggcctcgtcattcactccccaacccaaagaaaacatctccgcgactgttgccaattt |
99 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
36268689 |
attattgattgctactttcaagcaacctcatacgctacttttaagcctcgtcattcactccccaacccaaagaaaacatttccgcgaccgttgccaattt |
36268788 |
T |
|
| Q |
100 |
gttatcagctaactcaaacaaacttctaaaactatctttcaaagatctaccatccaaccaaggatcattccaaaacagagtagaagactcatccccaacc |
199 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| |||||| |
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| T |
36268789 |
gttatcagctaactgaaacaaacttctaaaactatctttcaaagatctacgatccaaccaaggatcatttcaaaacaaagtagaagactcatcaccaacc |
36268888 |
T |
|
| Q |
200 |
ttccgacaaatattatcaagcagtcgacctcaatctattagcccaacaccctctctaatattattcacagtctgccaacgcactgacccacctcccctcc |
299 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
36268889 |
ttccgacaaatattatcaagcagtcgacctcaatctactagcgcaacaccctctctaatattattcacagtatgccaacacactgacccacctcccctcc |
36268988 |
T |
|
| Q |
300 |
ctacacacaacttcccccctttcctgcatgtaacactcacataacaccttataccataaactcattgtatcctccaaca |
378 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36268989 |
ctacacacaactttccccctttcctgcatgtaacactcacataacaccttataccataaactcactgtatcctccaaca |
36269067 |
T |
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