View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8223_low_8 (Length: 351)
Name: NF8223_low_8
Description: NF8223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8223_low_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 207 - 351
Target Start/End: Complemental strand, 13827521 - 13827377
Alignment:
| Q |
207 |
ataactacattcgaacctttgaatcggcctcggtgaccaaataaccatcataaggacacgccctggtggtaccgacgacatacgtcaaacatggtttgca |
306 |
Q |
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| T |
13827521 |
ataactacattcgaacctttgaatcggcctcggtgaccaaataaccatcataaggacacgccctggtggtaccgacgacatacgtcaaacatggtttgca |
13827422 |
T |
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| Q |
307 |
atataaatgagtgcattgtgactgtaaagcttcattcggaaacac |
351 |
Q |
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| T |
13827421 |
atataaatgagtgcattgtgactgcaaagcttcattcggaaacac |
13827377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 13827726 - 13827604
Alignment:
| Q |
3 |
acaatgagatggaca-tcagacaaagttccttgccatgaacatccactcctatgatacaaacaatgaactgctattttcccaatcgtttccgccaatgtc |
101 |
Q |
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| T |
13827726 |
acaatgagatgtacaatcagacaaagttccttgccatgaacatccactcctatgatacaaacaatgaacagctattttcccaatcgtttccgccaatgtc |
13827627 |
T |
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| Q |
102 |
ttattcgactcaatcaacggctg |
124 |
Q |
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| T |
13827626 |
ttattcgactcaatcaacggctg |
13827604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 15497842 - 15497745
Alignment:
| Q |
22 |
acaaagttccttgccatgaacatccactcctatgatacaaacaatgaactgctattttcccaatcgtttccgccaatgtcttattcgactcaatcaac |
119 |
Q |
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| T |
15497842 |
acaaagttccttgccacgagcatccactcctacgacacaaacaacgaacctctattttccaaatagtttccgccaatgacttattcgactcaatcaac |
15497745 |
T |
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