View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8223_low_9 (Length: 342)
Name: NF8223_low_9
Description: NF8223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8223_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 328
Target Start/End: Original strand, 53037837 - 53038131
Alignment:
| Q |
15 |
tgcttcttcctagttatgatgatgatggatctttgttggttgctatttgtttgcaagaggttcatatggatgcattcaagaggcatttttatcaagacat |
114 |
Q |
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| T |
53037837 |
tgcttcttcctagttatgatgatgatggatctttgttggttgctatttgtttgcaagaggttcatatggatgcattcaagaggcatttttatcaagacat |
53037936 |
T |
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| Q |
115 |
tgtgtgatccatgcatggatgtattgacatgcagaaactaaaaataattaagttggataattctagactttacaaataacctaaacaaaataagtataaa |
214 |
Q |
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| T |
53037937 |
tgtgtgatc----catggatgtattgacatgcagaaactaaaaa----taagttgggtaattctagactttataaataacctaaacaaaataagtataaa |
53038028 |
T |
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| Q |
215 |
atttaattgaattatatgtagcaatgttggtataaggaaaccaatattcatttcataagcatatgtgtgttgccttgtaatcttgttt----gatgtcat |
310 |
Q |
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| T |
53038029 |
atttaattgaattatatgtagcaatgt---------------aatattcatttcataagcatatgtgtgttgccttgtaatcttgtttgatcgatgtcat |
53038113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 39995755 - 39995636
Alignment:
| Q |
15 |
tgcttcttcctagttatgatgatgatggatctttgttggttgctatttgtttgcaagaggttcatatggatgcattcaagaggcatttttatcaagacat |
114 |
Q |
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|||||||||||||| |||||||||| |||||||||||| ||||||| | |||||| | |||||||||| || |||| |||||||||||||||||| |
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| T |
39995755 |
tgcttcttcctagtcccaatgatgatggttctttgttggttattatttgtctacaagagatccatatggatgtctttaagaagcatttttatcaagacat |
39995656 |
T |
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| Q |
115 |
tgtgtgatccatgcatggat |
134 |
Q |
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| T |
39995655 |
tgtgtgatccatggatggat |
39995636 |
T |
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