View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8224_high_1 (Length: 1054)
Name: NF8224_high_1
Description: NF8224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8224_high_1 |
 | |
|
| [»] scaffold0057 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 589; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 18 - 672
Target Start/End: Original strand, 18438788 - 18439447
Alignment:
| Q |
18 |
gtttggtctttgcttagcagttcatgttagtgtcatggccactacctaagtatgacggttgcttgcttgcagcattgaagcgacatgttggaattccaat |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18438788 |
gtttggtctttgtttagcagttcatgttagtgtcatggccactacctaagtatgacggttgcttgcttgcagcattgaagcgacatgttggaattccaat |
18438887 |
T |
|
| Q |
118 |
gtttgtgtcatggcccactaactaagtctgaaggaacaattttgaagaggtgttatgatgctgatgacatcaacatattttttcttagaaaaatgggatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18438888 |
gtttgtgtcatggcccactaactaagtctgaaggaacaattttgaagaggtgttatgatgctgatgacatcaacatattttttcttagaaaaatgggatt |
18438987 |
T |
|
| Q |
218 |
ttt-ggaggcaatttgttagactgaattttggatatacatgattcgacaaagacaaaagtgccaagttggagttaaaacttgtccacatgttagaaaagt |
316 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18438988 |
ttttggaggcaatttgttagactgaattttggatatacatgattcgacaaagacaaaagtgccaagttggagttaaaacttgtccacatgttagaaaagt |
18439087 |
T |
|
| Q |
317 |
tgtaagttcgagatattatatttgcacttggcat-----agaggttgcaaattttattagcttcgacaatgaaaattcaaattattcatgacgaagcatg |
411 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18439088 |
tgtaagttcgacatattatatttgcacttggcatggcatagaggttgcaaagtttattagcttcgacaatgaaaattcaaattattcatgacgaagcatg |
18439187 |
T |
|
| Q |
412 |
attaaaatgtcgaagacacgcgggaacttatcaagaaattggaaagcatatcaaaacatgtgtcgaaggcatttagtttgtgactgttattttcagttac |
511 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18439188 |
attaaa-tgtcgaagacacgcgggaacttatcaagaaattggaaagcatatcaaaatatgtgtcgaaggcatttagtttgtgactgttattttcagttac |
18439286 |
T |
|
| Q |
512 |
ttaataataatatatatagtagttttgtataggaaaataggggtcacaaatcagtatacataatcctctagctaaaaatattcaagttaaaacgagaaaa |
611 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18439287 |
ttaataatagtatatatagtagttttgtataggaaaataggggtcacaaatcaaaatacataatcctctagctaaaaatattcaagttaaaacgagaaaa |
18439386 |
T |
|
| Q |
612 |
gagtaacaagagaatttatatatgatttgatgtatcaatctttatttatgctataaaaatg |
672 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18439387 |
gagtaacaagagaatgtgtatatgatttgatgtatcaatctttatttatgctataaaaatg |
18439447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 18 - 672
Target Start/End: Original strand, 18449646 - 18450305
Alignment:
| Q |
18 |
gtttggtctttgcttagcagttcatgttagtgtcatggccactacctaagtatgacggttgcttgcttgcagcattgaagcgacatgttggaattccaat |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18449646 |
gtttggtctttgtttagcagttcatgttagtgtcatggccactacctaagtatgacggttgcttgcttgcagcattgaagcgacatgttggaattccaat |
18449745 |
T |
|
| Q |
118 |
gtttgtgtcatggcccactaactaagtctgaaggaacaattttgaagaggtgttatgatgctgatgacatcaacatattttttcttagaaaaatgggatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18449746 |
gtttgtgtcatggcccactaactaagtctgaaggaacaattttgaagaggtgttatgatgctgatgacatcaacatattttttcttagaaaaatgggatt |
18449845 |
T |
|
| Q |
218 |
ttt-ggaggcaatttgttagactgaattttggatatacatgattcgacaaagacaaaagtgccaagttggagttaaaacttgtccacatgttagaaaagt |
316 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18449846 |
ttttggaggcaatttgttagactgaattttggatatacatgattcgacaaagacaaaagtgccaagttggagttaaaacttgtccacatgttagaaaagt |
18449945 |
T |
|
| Q |
317 |
tgtaagttcgagatattatatttgcacttggcat-----agaggttgcaaattttattagcttcgacaatgaaaattcaaattattcatgacgaagcatg |
411 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18449946 |
tgtaagttcgacatattatatttgcacttggcatggcatagaggttgcaaagtttattagcttcgacaatgaaaattcaaattattcatgacgaagcatg |
18450045 |
T |
|
| Q |
412 |
attaaaatgtcgaagacacgcgggaacttatcaagaaattggaaagcatatcaaaacatgtgtcgaaggcatttagtttgtgactgttattttcagttac |
511 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18450046 |
attaaa-tgtcgaagacacgcgggaacttatcaagaaattggaaagcatatcaaaatatgtgtcgaaggcatttagtttgtgactgttattttcagttac |
18450144 |
T |
|
| Q |
512 |
ttaataataatatatatagtagttttgtataggaaaataggggtcacaaatcagtatacataatcctctagctaaaaatattcaagttaaaacgagaaaa |
611 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18450145 |
ttaataatagtatatatagtagttttgtataggaaaataggggtcacaaatcaaaatacataatcctctagctaaaaatattcaagttaaaacgagaaaa |
18450244 |
T |
|
| Q |
612 |
gagtaacaagagaatttatatatgatttgatgtatcaatctttatttatgctataaaaatg |
672 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18450245 |
gagtaacaagagaatgtgtatatgatttgatgtatcaatctttatttatgctataaaaatg |
18450305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 556
Target Start/End: Original strand, 18454739 - 18455282
Alignment:
| Q |
18 |
gtttggtctttgcttagcagttcatgttagtgtcatggccactacctaagtatgacggttgcttgcttgcagcattgaagcgacatgttggaattccaat |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18454739 |
gtttggtctttgtttagcagttcatgttagtgtcatggccactacctaagtatgacggttgcttgcttgcagcattgaagcgacatgttggaattccaat |
18454838 |
T |
|
| Q |
118 |
gtttgtgtcatggcccactaactaagtctgaaggaacaattttgaagaggtgttatgatgctgatgacatcaacatattttttcttagaaaaatggga-t |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18454839 |
gtttgtgtcatggcccactaactaagtctgaaggaacaattttgaagaggtgttatgatgctgatgacatcaacatattttttcttagaaaaatgggatt |
18454938 |
T |
|
| Q |
217 |
ttttggaggcaatttgttagactgaattttggatatacatgattcgacaaagacaaaagtgccaagttggagttaaaacttgtccacatgttagaaaagt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18454939 |
ttttggaggcaatttgttagactgaattttggatatacatgattcgacaaagacaaaagtgccaagttggagttaaaacttgtccacatgttagaaaagt |
18455038 |
T |
|
| Q |
317 |
tgtaagttcgagatattatatttgcact-----tggcatagaggttgcaaattttattagcttcgacaatgaaaattcaaattattcatgacgaagcatg |
411 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18455039 |
tgtaagttcgacatattatatttgcacttggcatggcatagaggttgcaaagtttattagcttcgacaatgaaaattcaaattattcatgacgaagcatg |
18455138 |
T |
|
| Q |
412 |
attaaaatgtcgaagacacgcgggaacttatcaagaaattggaaagcatatcaaaacatgtgtcgaaggcatttagtttgtgactgttattttcagttac |
511 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18455139 |
att-aaatgtcgaagacacgcgggaacttatcaagaaattggaaagcatatcaaaatatgtgtcgaaggcatttagtttgtgactgttattttcagttac |
18455237 |
T |
|
| Q |
512 |
ttaataataatatatatagtagttttgtataggaaaataggggtc |
556 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18455238 |
ttaataatagtatatatagtagttttgtataggaaaataggggtc |
18455282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 739 - 1043
Target Start/End: Original strand, 18439514 - 18439818
Alignment:
| Q |
739 |
caactatgttgaaggagacaattatattcttctttttcgtatttaaatttttgaacagaacattcaaacttttatgagaaataattgcacaaatacgtcc |
838 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18439514 |
caactttgttgaaggagacaattatattcttcttttttgtatttaaatttttgaacagaacattcaaacttttatgagaaataattgcacaaatacgtcc |
18439613 |
T |
|
| Q |
839 |
taaaatttctagtttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaagtacaagtaaacacttacatactttgttatctgtatcctt |
938 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18439614 |
taaaatttctagtttgatcctgcaagcaattaatttaaaactaatgattgtttaccaaaagtacaagtaaacacttacatactttgttatctgtatcctt |
18439713 |
T |
|
| Q |
939 |
gattttttgtgggttagcaacctgatgggattagagaaacaacacgcctatcttctcaaccaaaaacaaaacccacatcatatcactcttctacatattc |
1038 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18439714 |
gattttttgtgggttagcaacctgatgggattagagaaacaacacgcctatcttctcaaccaaaaacaaaacccacatcatatcactcttctacatattc |
18439813 |
T |
|
| Q |
1039 |
tctgc |
1043 |
Q |
| |
|
||||| |
|
|
| T |
18439814 |
tctgc |
18439818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 739 - 1043
Target Start/End: Original strand, 18450372 - 18450676
Alignment:
| Q |
739 |
caactatgttgaaggagacaattatattcttctttttcgtatttaaatttttgaacagaacattcaaacttttatgagaaataattgcacaaatacgtcc |
838 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18450372 |
caactttgttgaaggagacaattatattcttcttttttgtatttaaatttttgaacagaacattcaaacttttatgagaaataattgcacaaatacgtcc |
18450471 |
T |
|
| Q |
839 |
taaaatttctagtttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaagtacaagtaaacacttacatactttgttatctgtatcctt |
938 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18450472 |
taaaatttctagtttgatcctgcaagcaattaatttaaaactaatgattgtttaccaaaagtacaagtaaacacttacatactttgttatctgtatcctt |
18450571 |
T |
|
| Q |
939 |
gattttttgtgggttagcaacctgatgggattagagaaacaacacgcctatcttctcaaccaaaaacaaaacccacatcatatcactcttctacatattc |
1038 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18450572 |
gattttttgtgggttagcaacctgatgggattagagaaacaacacgcctatcttctcaaccaaaaacaaaacccacatcatatcactcttctacatattc |
18450671 |
T |
|
| Q |
1039 |
tctgc |
1043 |
Q |
| |
|
||||| |
|
|
| T |
18450672 |
tctgc |
18450676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 800 - 913
Target Start/End: Original strand, 18104176 - 18104289
Alignment:
| Q |
800 |
attcaaacttttatgagaaataattgcacaaatacgtcctaaaatttc-tagtttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaa |
898 |
Q |
| |
|
|||||||||||| ||||||| | |||||||| || |||||| |||| ||||||||||||||||| ||| |||||||||||| |||||||||||||||| |
|
|
| T |
18104176 |
attcaaacttttctgagaaaca-ttgcacaattatgtcctacgatttaatagtttgatcatgcaagtaataaatttaaaactagtgattgtttaccaaaa |
18104274 |
T |
|
| Q |
899 |
gtacaagtaaacact |
913 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
18104275 |
acacacgtaaacact |
18104289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 796 - 898
Target Start/End: Original strand, 42577044 - 42577146
Alignment:
| Q |
796 |
gaacattcaaacttttatgagaaataattgcacaaatacgtcctaaaatttctagtttgatcatgcaagcaattaattt-aaaactaatgattgtttacc |
894 |
Q |
| |
|
||||||| |||| ||||| ||||||| ||||| ||||| |||||| | || |||||||||||||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
42577044 |
gaacatttaaacatttataagaaata-ttgcataaatatgtcctagatttactagtttgatcatgcaagtaacaaattttaaaactaatgattgtttacc |
42577142 |
T |
|
| Q |
895 |
aaaa |
898 |
Q |
| |
|
|||| |
|
|
| T |
42577143 |
aaaa |
42577146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 796 - 898
Target Start/End: Original strand, 113943 - 114045
Alignment:
| Q |
796 |
gaacattcaaacttttatgagaaataattgcacaaatacgtcctaaaatttctagtttgatcatgcaagcaattaatttaaaactaatgattgtttacca |
895 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||| ||| || |||| || |||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
113943 |
gaacattcaaacttttttgagaaactattgcacaaatatgtcttatgatttttaatttgatcatgcaagcaattaatctaaaactagtgattgtttacca |
114042 |
T |
|
| Q |
896 |
aaa |
898 |
Q |
| |
|
||| |
|
|
| T |
114043 |
aaa |
114045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 456 - 510
Target Start/End: Complemental strand, 23739563 - 23739509
Alignment:
| Q |
456 |
agcatatcaaaacatgtgtcgaaggcatttagtttgtgactgttattttcagtta |
510 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
23739563 |
agcatatcaagacatgtgtcgaaggcatttattttgtgacttttattttcagtta |
23739509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 796 - 894
Target Start/End: Complemental strand, 23689309 - 23689211
Alignment:
| Q |
796 |
gaacattcaaacttttatgagaaataattgcacaaatacgtcctaaaatttctagtttgatcatgcaagcaattaatttaaaactaatgattgtttacc |
894 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||||| || || ||||| ||||||| ||||| | ||||||||||||| ||| | |||||||||| |
|
|
| T |
23689309 |
gaacattcaaacttttctgataaactattgcacaaatatatcataggatttcaagtttgaacatgccaacaattaatttaaacctagtaattgtttacc |
23689211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 460 - 510
Target Start/End: Original strand, 113609 - 113659
Alignment:
| Q |
460 |
tatcaaaacatgtgtcgaaggcatttagtttgtgactgttattttcagtta |
510 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||||||| || ||||||||||| |
|
|
| T |
113609 |
tatcaagacatgtatcgaaagcatttagtttgtgaccgtcattttcagtta |
113659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 851 - 896
Target Start/End: Complemental strand, 23354990 - 23354945
Alignment:
| Q |
851 |
tttgatcatgcaagcaattaatttaaaactaatgattgtttaccaa |
896 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
23354990 |
tttgatcttgcaagcaagtaatttaaaactaacgcttgtttaccaa |
23354945 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 800 - 898
Target Start/End: Original strand, 4823793 - 4823892
Alignment:
| Q |
800 |
attcaaacttttatgagaaataattgcacaaatacgtcctaaaatttctagtttgatcatgcaagcaattaattt--aaaactaatgattgtttaccaaa |
897 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||||| |||||||||||||||| |||||||||||| |||||||| | |||| || ||||||||||||||| |
|
|
| T |
4823793 |
attcaaacttttttaagaaataattgcataaatatgtcctaaaatttctag-ttgatcatgcaaacaattaatctaaaaaattagtgattgtttaccaaa |
4823891 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 852 - 898
Target Start/End: Complemental strand, 23769177 - 23769131
Alignment:
| Q |
852 |
ttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaa |
898 |
Q |
| |
|
|||||| |||||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
23769177 |
ttgatcttgcaagtaattaattttaaaccaatgattgtttaccaaaa |
23769131 |
T |
|
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Target: chr3 (Bit Score: 49; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 796 - 898
Target Start/End: Complemental strand, 21412492 - 21412389
Alignment:
| Q |
796 |
gaacattcaaac-ttttatgagaaataattgcacaaatacgtcctaaaattt-ctagtttgatcatgcaagcaattaatttaaaactaatgattgtttac |
893 |
Q |
| |
|
|||||||||||| |||| | ||||||| ||||||||||| ||||||| ||| |||||||||||||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
21412492 |
gaacattcaaacattttttaagaaata-ttgcacaaatatgtcctaatattcactagtttgatcatgcaagtaattaatttaaaactagtaattgtttac |
21412394 |
T |
|
| Q |
894 |
caaaa |
898 |
Q |
| |
|
||||| |
|
|
| T |
21412393 |
caaaa |
21412389 |
T |
|
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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 796 - 898
Target Start/End: Complemental strand, 1884256 - 1884154
Alignment:
| Q |
796 |
gaacattcaaacttttatgagaaataattgcacaaatacgtcctaaaattt-ctagtttgatcatgcaagcaattaatttaaaactaatgattgtttacc |
894 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||||||||||| |||||| |||| |||||||||| |||||| || |||| ||||||| |||||||||||| |
|
|
| T |
1884256 |
gaacattcaaacatttttgagaaata-ttgcacaaatatgtcctatgatttactagtttgatactgcaagtaacaaattgaaaactagtgattgtttacc |
1884158 |
T |
|
| Q |
895 |
aaaa |
898 |
Q |
| |
|
|||| |
|
|
| T |
1884157 |
aaaa |
1884154 |
T |
|
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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 843 - 898
Target Start/End: Complemental strand, 20623125 - 20623070
Alignment:
| Q |
843 |
atttctagtttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaa |
898 |
Q |
| |
|
|||| |||||||||| | ||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
20623125 |
atttttagtttgatcctacaaacaattaatttaaaactaatgtttgtttaccaaaa |
20623070 |
T |
|
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Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 796 - 898
Target Start/End: Original strand, 23024104 - 23024206
Alignment:
| Q |
796 |
gaacattcaaacttttatgagaaataattgcacaaatacgtcctaaaattt-ctagtttgatcatgcaagcaattaatttaaaactaatgattgtttacc |
894 |
Q |
| |
|
|||||||||||| ||| | ||||||| ||||||||||| |||||| |||| |||||||||||| ||| | ||| |||||||||||| |||||| ||||| |
|
|
| T |
23024104 |
gaacattcaaacatttctaagaaata-ttgcacaaatatgtcctaggatttactagtttgatcaagcacgtaataaatttaaaactagtgattgcttacc |
23024202 |
T |
|
| Q |
895 |
aaaa |
898 |
Q |
| |
|
|||| |
|
|
| T |
23024203 |
aaaa |
23024206 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 844 - 898
Target Start/End: Original strand, 4093948 - 4094002
Alignment:
| Q |
844 |
tttctagtttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaa |
898 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| |
|
|
| T |
4093948 |
tttctagtttgatcatgcaagtaattaattcaaaactagcgattgtttaccaaaa |
4094002 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 813 - 898
Target Start/End: Original strand, 4288582 - 4288667
Alignment:
| Q |
813 |
tgagaaataattgcacaaatacgtcctaaaattt-ctagtttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaa |
898 |
Q |
| |
|
||||||||| ||||||||||| ||| || |||| ||||||| ||| || || ||| ||||||||||||||||||||||||||||| |
|
|
| T |
4288582 |
tgagaaata-ttgcacaaatatgtcataggatttactagtttaatcctgtgagtaataaatttaaaactaatgattgtttaccaaaa |
4288667 |
T |
|
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Target: chr8 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 796 - 911
Target Start/End: Original strand, 5527815 - 5527931
Alignment:
| Q |
796 |
gaacattcaaacttttatgagaaataattgcacaaatacgtcctaaaattt-ctagtttgatcatgcaagcaattaatttaaaactaatgattgtttacc |
894 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||||| ||| || ||| ||||||||||| |||||| ||||| |||||||||| ||||||||| | |
|
|
| T |
5527815 |
gaacattcaaacatttttgaacaataattgcacaaatatgtcataggttttactagtttgatcttgcaagtaattagtttaaaactagcgattgtttagc |
5527914 |
T |
|
| Q |
895 |
aaaagtacaagtaaaca |
911 |
Q |
| |
|
|||| ||| ||||||| |
|
|
| T |
5527915 |
aaaattactggtaaaca |
5527931 |
T |
|
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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 796 - 898
Target Start/End: Original strand, 24750448 - 24750550
Alignment:
| Q |
796 |
gaacattcaaacttttatgagaaataattgcacaaatacgtcctaaaatttc-tagtttgatcatgcaagcaattaatttaaaactaatgattgtttacc |
894 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||||| ||| || |||| |||||||||| || ||| ||| ||||||||| | |||||||||||| |
|
|
| T |
24750448 |
gaacattcaaagttttctgagaaata-ttgcacaaatatgtcataggatttagtagtttgatcttgaaagtaataaatttaaaaaaattgattgtttacc |
24750546 |
T |
|
| Q |
895 |
aaaa |
898 |
Q |
| |
|
|||| |
|
|
| T |
24750547 |
aaaa |
24750550 |
T |
|
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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 843 - 881
Target Start/End: Original strand, 23412989 - 23413027
Alignment:
| Q |
843 |
atttctagtttgatcatgcaagcaattaatttaaaacta |
881 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
23412989 |
atttctagtttgatcctgcaagcaattaatctaaaacta |
23413027 |
T |
|
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Target: scaffold0057 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 455 - 504
Target Start/End: Complemental strand, 74135 - 74086
Alignment:
| Q |
455 |
aagcatatcaaaacatgtgtcgaaggcatttagtttgtgactgttatttt |
504 |
Q |
| |
|
||||||||||| | ||||||||||| | |||||||||||||||||||||| |
|
|
| T |
74135 |
aagcatatcaagatatgtgtcgaagacttttagtttgtgactgttatttt |
74086 |
T |
|
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Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 546 - 642
Target Start/End: Original strand, 56367758 - 56367854
Alignment:
| Q |
546 |
aaataggggtcacaaatcagtatacataatcctctag-ctaaaaatattcaagttaaaacgagaaaagagtaacaagagaatttatatatgatttgat |
642 |
Q |
| |
|
||||||||||||||||||| |||||||||||| || || ||| ||| ||||||| ||| ||||||||||||| ||| ||| ||| | ||||||||| |
|
|
| T |
56367758 |
aaataggggtcacaaatcaa-atacataatcctttatactcaaagtatccaagttacaacaagaaaagagtaacgagataatgtatgtgtgatttgat |
56367854 |
T |
|
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