View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8224_high_2 (Length: 452)
Name: NF8224_high_2
Description: NF8224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8224_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 229585 - 229161
Alignment:
| Q |
1 |
ccctttagtttgactcatatcaaagctttatttcgagatcaaatatttcggttcgtaaatgtatatgttgcctttcctaattaaaaaacatgtttattta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
229585 |
ccctttagtttgactcatatcaaagctttatttcgagatcaaatatttcggttcgtaaat-------------ttcctaattaaaaaacatgtttatgta |
229499 |
T |
|
| Q |
101 |
taaactaagcttccttttcttctactttatctatcattccactattttctagccaaattttgtgtgtgcacatcgttttgatgcaaacatagtaaattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
229498 |
taaactaagcttccttttcttctactttatctatcattccactattttctagccaaattttgtgtgtgcacatcgttttgatgcaaacatagtaaattgt |
229399 |
T |
|
| Q |
201 |
tagcctaattaattttgtgggtatattgcattgcagagtggggcagagaagttgtggtcacataagatggttggattagtatttggatgtgctttcctgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
229398 |
tagcctaattaattttgtgggtatattgcattgcagagtggggcagagaagttgtggtcacataagatggttggattagtatttggatgtgctttcctgt |
229299 |
T |
|
| Q |
301 |
ccttgctgttctagatcgatacctctgtcttctcttcagaactcagattgttatttttacctctatatattattattattttctcgatgtgatatgggag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
229298 |
ccttgctgttctagatcgatacctctgtcttctcttcagaactcagattgttatttttacctctatatattat---tattttctcgatgtgatatgggag |
229202 |
T |
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| Q |
401 |
tttattactacatacattgtttgcattcttgagacattcat |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
229201 |
tttattactacatacattgtttgcattcttgagacattcat |
229161 |
T |
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