View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8224_high_3 (Length: 343)
Name: NF8224_high_3
Description: NF8224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8224_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 39155748 - 39156080
Alignment:
| Q |
1 |
tcatcatcgctcatcgcctttccacgattcgtaaggccgattcaatagtagttcttcaatcaggaagggtggttgaaagtggttctcacaatgagctact |
100 |
Q |
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| T |
39155748 |
tcatcatcgctcatcgcctttccacgattcgtaaggctgattcaatagtagttcttcaatcaggaagggtggttgaaagtggttctcacaatgagctact |
39155847 |
T |
|
| Q |
101 |
ccaactgaacaatggacaaggtggggtttacaccaaaatgctaaatttgcagcaaacaagtcaaaatgaaaatgcacagcatcaaataaacaagagccct |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39155848 |
ccaactgaacaatggacaaggtggggtttacaccgaaatgctaaatttgcagcaaacaagtcaaaatgaaaatgcacagcatcaaataaacaagagccct |
39155947 |
T |
|
| Q |
201 |
cgtgcaatggaaaatccaataacaagttcaaatccaagccggaaaagtactccaattcatcatgcatttagccctgcacaaccatttagtcccatatatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39155948 |
cgtgcaatggaaaatccaataacaagttcaaatccaagccggaaaagtactccaattcatcatgcatttagccctgcacaaccatttagtcccatatatt |
39156047 |
T |
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| Q |
301 |
caatcagtgttatcggctctagctttgatgatg |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
39156048 |
caatcagtgttatcggctctagctttgatgatg |
39156080 |
T |
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