View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8224_high_4 (Length: 247)
Name: NF8224_high_4
Description: NF8224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8224_high_4 |
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| [»] scaffold0154 (2 HSPs) |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 14811 - 14582
Alignment:
| Q |
1 |
aaaacagagtttcgaatgcagaggaaccccactttttatgtcaccggaatcagtaaacaatggcgagcatgaatctcccgcggatatttgggcacttggg |
100 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14811 |
aaaacagagttttgaatgcagaggaaccccgctttttatgtcgccggaatcagtaaacaatggcgagcatgaatctcccgcggatatttgggcacttggg |
14712 |
T |
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| Q |
101 |
tgtgcagtggtggagatggtaactggaaaaccagcttggaatttggagaaagattcaaatatgtggtcgttgttgctccggattggtgccggaaaagaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||| |
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| T |
14711 |
tgtgcagtggtggagatggtaactggaaaaccagcttggaatttggagaaagattcaaatatgtggtcgttgttgcttcagattggtgccggagaagaat |
14612 |
T |
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| Q |
201 |
cgccgttgatacccgaagaattatcgaaag |
230 |
Q |
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| T |
14611 |
cgccgttgatacccgaagaattatcgaaag |
14582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 24231 - 24002
Alignment:
| Q |
1 |
aaaacagagtttcgaatgcagaggaaccccactttttatgtcaccggaatcagtaaacaatggcgagcatgaatctcccgcggatatttgggcacttggg |
100 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24231 |
aaaacagagttttgaatgcagaggaaccccgctttttatgtcgccggaatcagtaaacaatggcgagcatgaatctccggcggatatttgggcacttggg |
24132 |
T |
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| Q |
101 |
tgtgcagtggtggagatggtaactggaaaaccagcttggaatttggagaaagattcaaatatgtggtcgttgttgctccggattggtgccggaaaagaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||| |
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| T |
24131 |
tgtgcagtggtggagatggtaactggaaaaccagcttggaatttggagaaagattcaaatatgtggtcgttgttgcttcagattggtgccggagaagaat |
24032 |
T |
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| Q |
201 |
cgccgttgatacccgaagaattatcgaaag |
230 |
Q |
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| T |
24031 |
cgccgttgatacccgaagaattatcgaaag |
24002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 525 - 746
Alignment:
| Q |
1 |
aaaacagagtttcgaatgcagaggaaccccactttttatgtcaccggaatcagtaaacaatggcgagcatgaatctcccgcggatatttgggcacttggg |
100 |
Q |
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|||||||||||| ||||||| ||||| |||||||||||||| ||||||||||||||| | || |||||||||||||| |||||||| |||||||||||| |
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| T |
525 |
aaaacagagtttgaaatgcaggggaactccactttttatgtcgccggaatcagtaaaccacggtgagcatgaatctccggcggatatatgggcacttggg |
624 |
T |
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| Q |
101 |
tgtgcagtggtggagatggtaactggaaaaccagcttggaatttggagaaagattcaaatatgtggtcgttgttgctccggattggtgccggaaaagaat |
200 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| |||||| |
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| T |
625 |
tgtgcggtggtggagatggtaactggaaaaccagcatggaatttggagaaagattcaaatatgtggtcattgttgcttcggattggtaccggagaagaat |
724 |
T |
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| Q |
201 |
cgccgttgatacccgaagaatt |
222 |
Q |
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||||| |||||||||||||||| |
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| T |
725 |
cgccggtgatacccgaagaatt |
746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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