View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8224_low_2 (Length: 478)
Name: NF8224_low_2
Description: NF8224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8224_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 461
Target Start/End: Original strand, 229161 - 229590
Alignment:
| Q |
16 |
atgaatgtctcaagaatgcaaacaatgtatgtagtaataaactcccatatcacatcgagaaaataataataatatatagaggtaaaaataacaatctgag |
115 |
Q |
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| T |
229161 |
atgaatgtctcaagaatgcaaacaatgtatgtagtaataaactcccatatcacatcgagaaaata---ataatatatagaggtaaaaataacaatctgag |
229257 |
T |
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| Q |
116 |
ttctgaagagaagacagaggtatcgatctagaacagcaaggacaggaaagcacatccaaatactaatccaaccatcttatgtgaccacaacttctctgcc |
215 |
Q |
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| T |
229258 |
ttctgaagagaagacagaggtatcgatctagaacagcaaggacaggaaagcacatccaaatactaatccaaccatcttatgtgaccacaacttctctgcc |
229357 |
T |
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| Q |
216 |
ccactctgcaatgcaatatacccacaaaattaattaggctaacaatttactatgtttgcatcaaaacgatgtgcacacacaaaatttggctagaaaatag |
315 |
Q |
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| T |
229358 |
ccactctgcaatgcaatatacccacaaaattaattaggctaacaatttactatgtttgcatcaaaacgatgtgcacacacaaaatttggctagaaaatag |
229457 |
T |
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| Q |
316 |
tggaatgatagataaagtagaagaaaaggaagcttagtttataaataaacatgttttttaattaggaaaggcaacatatacatttacgaaccgaaatatt |
415 |
Q |
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| T |
229458 |
tggaatgatagataaagtagaagaaaaggaagcttagtttatacataaacatgttttttaattaggaa-------------atttacgaaccgaaatatt |
229544 |
T |
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| Q |
416 |
tgatctcgaaataaagctttgatatgagtcaaactaaagggttgtg |
461 |
Q |
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| T |
229545 |
tgatctcgaaataaagctttgatatgagtcaaactaaagggttgtg |
229590 |
T |
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