View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8224_low_3 (Length: 254)
Name: NF8224_low_3
Description: NF8224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8224_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 2564472 - 2564249
Alignment:
| Q |
17 |
catcaatatgatttttgtttaggattttggagaaaatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtatacaaaag |
116 |
Q |
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| T |
2564472 |
catcaatattatttttgtttaggattttggagaaaatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtatacaaaag |
2564373 |
T |
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| Q |
117 |
tccacctgagttaataataaatcaaatgctaattcagctcattccatcaataatgaattaatgttgattgaaataagattgacctataagtaaatatata |
216 |
Q |
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| T |
2564372 |
tccacctgagttaataa------------taattcagctcattccatcaataatgaattaatgttgattgaaataagattgacctataagtaaatatata |
2564285 |
T |
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| Q |
217 |
ccaggagnnnnnnnaatctgtagagagtaacttcct |
252 |
Q |
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||||| | |||||||||||||||||||||| |
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| T |
2564284 |
ccaggtgtttttttaatctgtagagagtaacttcct |
2564249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 2574367 - 2574246
Alignment:
| Q |
17 |
catcaatatgatttttgtttaggattttggagaaaatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtatacaaaag |
116 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||| |||||| ||| |
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| T |
2574367 |
catcaatatggtttttgtttaagattttggagaaaatgaatagtaccatggttgaggttgtggtatattgcaaattactgctatctctaatatacagaag |
2574268 |
T |
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| Q |
117 |
tccacctgagttaataataaat |
138 |
Q |
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||||||||||||| ||||||| |
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| T |
2574267 |
cccacctgagttaacaataaat |
2574246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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