View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8225_high_1 (Length: 393)
Name: NF8225_high_1
Description: NF8225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8225_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 179 - 382
Target Start/End: Complemental strand, 8943779 - 8943576
Alignment:
| Q |
179 |
actttgttgtattattagagttcttaaaatacaaaacctactccaacaccaatacaaaacaaaaccaagcagagagctaaacatggaatatggattatgt |
278 |
Q |
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| T |
8943779 |
actttgttgtattattagagttcttaaaatacaaaacctactccgacaccaatacaaaataaaaccaagcagagagctaaacatgtaatatggattatgt |
8943680 |
T |
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| Q |
279 |
ggggtagggcttttagtatcaattgtggtatgcaatatgcatgaacatactcttttacacattaatgattgcaaatagtttcataaaggatcttgtagtt |
378 |
Q |
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| T |
8943679 |
ggggtagggctgttagtatcaattgtggtatgcaatatgcatgaacatactcttttacacattaatgattacaaatagtttcataaaggatcttgtagtt |
8943580 |
T |
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| Q |
379 |
tcat |
382 |
Q |
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|||| |
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| T |
8943579 |
tcat |
8943576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 8944096 - 8943968
Alignment:
| Q |
17 |
ctaaaacagggttgtttctccattgccgatccttctaacacttgaattagagaaccaatttgtacacgcttctgttaccgtatctgtgtaacagcaaagg |
116 |
Q |
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| T |
8944096 |
ctaaaacaaggttgtttctccattgccgatccttctaacacttgaattagagaaccaatttgtgcacgcttctgttaccgtatctgtgtaacagcaaagg |
8943997 |
T |
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| Q |
117 |
atgccacaccacctcagtgtttgttaaca |
145 |
Q |
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| T |
8943996 |
atgccacaccacctcagtgtttgttaaca |
8943968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 43475594 - 43475546
Alignment:
| Q |
31 |
tttctccattgccgatccttctaacacttgaattagagaaccaatttgt |
79 |
Q |
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| T |
43475594 |
tttcaccattaccgatccttctaaaaattgaattagagaaccaatttgt |
43475546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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