View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8225_high_2 (Length: 393)
Name: NF8225_high_2
Description: NF8225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8225_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 3589340 - 3589219
Alignment:
| Q |
17 |
agtatcaacacaaatatgccatttaaaatctttagtgtatgaaagttcagcctacaaataaagcactttgaagctattaggcataaaggttgaacacaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3589340 |
agtatcaacacaaatatgccatttaaaatctttagtgtatgaaagttcagcctacaaataaagcactttgaagctattaggcataaaggttgaacacaaa |
3589241 |
T |
|
| Q |
117 |
acacatgtaaagctatatacat |
138 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3589240 |
acacatgtaaagctatatacat |
3589219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 3593908 - 3593774
Alignment:
| Q |
213 |
cccaattctaatcaaaatgctctcagttgtgtttgttatattgaacaccaccggtgctatatgtcttcatttcattnnnnnnngaaataaagatgaaaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
3593908 |
cccaattctaatcaaaatgctctcagttgtgtttgttacattgaacaccaccggtgctatatgtcttcatttcattaaaaaaagaaataaagatggaaag |
3593809 |
T |
|
| Q |
313 |
ttaagcaaaggatgcatggttcggtatttgataga |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
3593808 |
ttaagcaaaggatgcatggttcggtatttgataga |
3593774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 8826772 - 8826652
Alignment:
| Q |
18 |
gtatcaacacaaatatgccatttaaaatctttagtgtatgaaagttcagcctacaaataaagcactttgaagctattaggcataaaggttgaacacaaaa |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8826772 |
gtatcaacacaagtatgccatttaaaatctttagtatatgaaaattcagcctagaaataaagcaatttgaagctattaggcataaaggttgaacacgaaa |
8826673 |
T |
|
| Q |
118 |
cacatgtaaagctatatacat |
138 |
Q |
| |
|
||| |||||| ||||||||| |
|
|
| T |
8826672 |
aacacgtaaagttatatacat |
8826652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 3589153 - 3589103
Alignment:
| Q |
205 |
tgatttgacccaattctaatcaaaatgctctcagttgtgtttgttatattg |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3589153 |
tgatttgacccaattctaatcaaaatgctctcagttgtgtttcttatattg |
3589103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 344 - 383
Target Start/End: Complemental strand, 3589034 - 3588995
Alignment:
| Q |
344 |
tagacaagaattcaagtacgtgtttaacctaagttctctg |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3589034 |
tagacaagaattcaagtacgtgtttaacctaagttctctg |
3588995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 344 - 383
Target Start/End: Complemental strand, 3593694 - 3593655
Alignment:
| Q |
344 |
tagacaagaattcaagtacgtgtttaacctaagttctctg |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3593694 |
tagacaagaattcaagtacgtgtttaacctaagttctctg |
3593655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University