View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8225_low_4 (Length: 250)
Name: NF8225_low_4
Description: NF8225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8225_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 49862370 - 49862166
Alignment:
| Q |
23 |
gtcatcaatcaactcactgagtctcctccctttcacctcattctgcatctgcggcacaatccaacgacggagaaatgcttggtttcctctctctgctaag |
122 |
Q |
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| T |
49862370 |
gtcatcaatcaactcaccgagtctcctccctttcacctcgttctgca---------caatccaacgacggagaaatgcttggtttcctctctctgctaag |
49862280 |
T |
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| Q |
123 |
gattctcgtgaacgacaaaacacgactcattggtgaccgaaacgatgatggtgaatcacaactcgactctcccacagcaaaactcttgcaatcggattca |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49862279 |
gattctcgtgaacgacaaaacacgactcattggtgaccgaaacgatgatggtgaatcacaactcgactctcccacagcaaaactcttgcaatcggattca |
49862180 |
T |
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| Q |
223 |
ctccttctcggaat |
236 |
Q |
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|||||||||||||| |
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| T |
49862179 |
ctccttctcggaat |
49862166 |
T |
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