View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8226_high_12 (Length: 484)
Name: NF8226_high_12
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Original strand, 55299930 - 55300386
Alignment:
| Q |
18 |
gaagaaacatcaaaacatagataggaacgatatatgttttgttgcattggattgcatggatgtcatcattgcagcataggaatttcttggaagctccgac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
55299930 |
gaagaaacatcaaaacatagataggaacgatatatgttttgttgcattggattgcatggatgtcatcattgcagcataggaatttcttggaagctccaac |
55300029 |
T |
|
| Q |
118 |
tagagacggcacaagtataatagtaatgaaatgttattggttgaatggtagagtaagagaaagaaagaaagagagaatgaaagtacctagcccgactcgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55300030 |
tagagacggcacaagtataatagtaatgaaatgttattggttgaatggtagagtaagagaaagaaagaaagagagaatgaaagtacctagcccgactcgg |
55300129 |
T |
|
| Q |
218 |
aagcaatctgttggagatcgtcacatgatatcgcctactcgccacaatatgtcacgttccgcacggaggaggaagaacagtggtcattggtggttgtcat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55300130 |
aagcaatctgttggagatcgtcacatgatatcgcctactcgccacaatatgtcacgttccgcacggaggaggaagaacagtggtcattggtggttgtcat |
55300229 |
T |
|
| Q |
318 |
caatatcatggatgaagaaagaggttgactcatatgatatgactcatcatgctcacctctcttctgatagtccctactacaagggtctcaccgatcaatc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
55300230 |
caatatcatggatgaagaaagaggttgactcatatgatatgactcatcatactcacctctcttctgatagtccctactacaagggtcttaccgatcaatc |
55300329 |
T |
|
| Q |
418 |
tcttgctattcctcatgaagaataccaagaggatgacaacaacaatatctcttcatc |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55300330 |
tcttgctattcctcatgaagaataccaagaggatgacaacaacaatatctcttcatc |
55300386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University