View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_high_16 (Length: 472)
Name: NF8226_high_16
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 46588059 - 46587605
Alignment:
| Q |
1 |
attcaattgggccatgagggctaaattaaaaggaacgtgtagatggaacagcaatgaacttggtgagtccagcaatacagtcataggcattaccttcatc |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46588059 |
attcaattgggccatgagggttaaattaaaaggaacgtgtagatggaacagcaatgaacttggtgagtccagcaatacagtcataggcattgccttcatc |
46587960 |
T |
|
| Q |
101 |
agaggcaaagtaataaggcttcaactgattcagctcaatctttatcccctcaccaccaccttgttcagcactaccaagcaactttgctcctctaaattca |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46587959 |
agaggcaaagtaataaggcttcaattgattcagctcaatctttatcccctcaccaccaccttgatcagcactaccaagcaactttgctcctctaaattca |
46587860 |
T |
|
| Q |
201 |
cacgtcgtgtaactccacatattcggtagcaagtaaacgctgggaacaaccgtggaatttcctgtagggggatacttgaacactgcattatttacgtatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46587859 |
cacgtcgtgtaactccacatattcggtagcaagtaaacgctgggaacaaccgtggaatttcctgtagggggatacttgaacactgcattatttacgtatg |
46587760 |
T |
|
| Q |
301 |
cacaaaccaaaattaatccatcaatcaaatgatgaagaaaaaatatgtatatatgcgcaaacaatggacacacagcgacatttgataataatttg-nnnn |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46587759 |
cacaaaccaaaattaatccatcaatcaaatgatgaagaaaaaatatgtatatatgcgcaaacaatggacacacagcgacctttgataataatttgaaaaa |
46587660 |
T |
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| Q |
400 |
nnntcaaagtgattaaatataattaaatgcgttggtgtcgtgttagtgtcaaaaa |
454 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
46587659 |
aaatcaaagtgattaaatataattaaatgtgttggtgttgtgttagtgtcaaaaa |
46587605 |
T |
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