View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_high_18 (Length: 451)
Name: NF8226_high_18
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 435
Target Start/End: Complemental strand, 46129716 - 46129293
Alignment:
| Q |
14 |
agagccatattgtacctcacggcctgcaagtgaaagcagtactgtacccataccaccagcagccaaccacttctgtgcagagagacccaacaactccatg |
113 |
Q |
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| T |
46129716 |
agagccatattgtacctcacggcctgcaagtgaaagcagtactgtacccataccaccagcagccaaccacttctgtgcagagagacccaacaactccatg |
46129617 |
T |
|
| Q |
114 |
aacaatgttacggcagcaacccatactgcagtatatacagctttcccaataagatcaatgctcatctgtcatgcacaatacaattttacattgaatgagc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46129616 |
aacaatgttacggcagcaacccatactgcagtatatacagctttcccaataagatcaatgctcatctgtcatgcacaatacaattttacattgaatgagc |
46129517 |
T |
|
| Q |
214 |
tttgcatttacattccaggagaaccctcataattaacattgtggaaaataatcctatattttttacaggttgacttcttttctaatcttcatttgaaata |
313 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46129516 |
tttgcatttacattccaggagcaccctcataattaacattgtggaaaataatcctatattttttacaggttgacttcttttctaatcttcatttgaaata |
46129417 |
T |
|
| Q |
314 |
acataactcatctaaagctttaagtggact--cnnnnnnnttaactcattattttagaaaaatgttacacacacatgaatggaaacatggcaaagattat |
411 |
Q |
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| T |
46129416 |
aaataactcatctaaagctttaagtggactcacaaaaaaattaactcattattttagaaaaatgtttcacacacatgaatggaaacatggcaaagattat |
46129317 |
T |
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| Q |
412 |
gtaaaaggaacatacttttctttc |
435 |
Q |
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| T |
46129316 |
gtaaaaggaacatacttttctttc |
46129293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 46098359 - 46098223
Alignment:
| Q |
48 |
agcagtactgtacccataccaccagcagccaaccacttctgtgcagagagacccaacaactccatgaacaatgttacggcagcaacccatactgcagtat |
147 |
Q |
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|||| |||||| |||| ||||||||||| ||||||||||||| |||| ||| | |||||||||||| |||| || ||||||||||| || ||||| | |
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| T |
46098359 |
agcaatactgtgcccaaaccaccagcagttaaccacttctgtgtggagaaacctagcaactccatgaataatgacacagcagcaacccaaacagcagtgt |
46098260 |
T |
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| Q |
148 |
atacagctttcccaataagatcaatgctcatctgtca |
184 |
Q |
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||| ||||||||| || ||||| || ||||||||| |
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| T |
46098259 |
atatggctttcccagcaaaatcaaggcccatctgtca |
46098223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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