View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_high_19 (Length: 443)
Name: NF8226_high_19
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 45 - 406
Target Start/End: Complemental strand, 1192649 - 1192278
Alignment:
| Q |
45 |
acatttttcaaaggataataacatccaacaaattggtggtgatatgtgaatcttcctcgaaaagtaacattctaagcaaagtgcctct-------gtaca |
137 |
Q |
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| T |
1192649 |
acatttttcaaaggataataacatccaacaaattggtg---atatgtgaatcttcatcaaaaagtgacattctaagcaaagtgcctctactacaagtaca |
1192553 |
T |
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| Q |
138 |
agaattcaaagagcatctttgaagaccagta-------cagatggactcgaagataagcattcttgaagtcattttagaattcaaattatttcataacta |
230 |
Q |
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| T |
1192552 |
agaattcaaagagaatctttgaagatgagtagaaaatacagatggacttgaagataagcattcttgaagtcatttgagaattcaaattatttcataacta |
1192453 |
T |
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| Q |
231 |
ccataccaaaagtgtgctcagagagttttaaaaaagtagttatgtttggaaagtcttgagcgttcatgaactcaaaataccagaagaaaaagttttttaa |
330 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |
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| T |
1192452 |
ccataccaaaagtgtgctcagagagttttaaagaagtagttatgtttagaaagtcttgagtgttcaagaactcaaaatacgagaagaaaaagttttttaa |
1192353 |
T |
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| Q |
331 |
gctagttagaagacacttgacatgttacaccaaaggagttcattttcacaccaaatgtgtgcatactagattacac |
406 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| |||||||||| |
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| T |
1192352 |
gctagttagaagacacttgacatgttacaccaaa-gagttcattttcataccaattgtgtgcatattagattacac |
1192278 |
T |
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