View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_high_27 (Length: 342)
Name: NF8226_high_27
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 30411643 - 30411328
Alignment:
| Q |
1 |
taatccaccaatacagtacttggtgatgaaactctgtaatctttgaactagaatttcaatgagtggtgcatttaataaagtataataatcgaaactttgt |
100 |
Q |
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| T |
30411643 |
taatccaccaatacagtacttggtgatgaaactctgtaatctttgacctagaatttcaatgagtggtgcatttaataaagtataataatcgaaactttgt |
30411544 |
T |
|
| Q |
101 |
attatattggatcaattgaacagttatgatcgaagtatttttaaaagttacaggtatgtctttaactaatttttgcttatggaggttttaagtgagcaat |
200 |
Q |
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|||||||||||| ||||||| ||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30411543 |
attatattggataaattgaatagttatgattgaaatattttaaaaagttacaggtatgtctttaactaatttttgcttatggaggttttaagtgagcaat |
30411444 |
T |
|
| Q |
201 |
tgannnnnnnnnnaaagaagtgagcaattgttgaaggcaactttctattagcaccatattcagggacggatccaccgtatggttgaatgtggctatctga |
300 |
Q |
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||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
30411443 |
tga-tttttttttaaagaagtgagcaattgttaaaggcaactttctattagcaccatattcagggacggatccaccatatggttgaatgtggctatcgga |
30411345 |
T |
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| Q |
301 |
ctctcaatcaattggtg |
317 |
Q |
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| |||||||||||||| |
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| T |
30411344 |
ttgtcaatcaattggtg |
30411328 |
T |
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