View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_high_35 (Length: 270)
Name: NF8226_high_35
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 19929776 - 19929940
Alignment:
| Q |
18 |
gttgtggacttgtgggaaagagtaatggatatcaaaatttgcaactgcattgactagtgttgtagaacgacaacctgcttttatttgaaaacagagtgtg |
117 |
Q |
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| T |
19929776 |
gttgtggacttgtgggaaagagtaatggatatcaaaatttgcaactgcattgactagtgttgtagaacgacaacctgcttttatttgaaaacagagtgtg |
19929875 |
T |
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| Q |
118 |
atattagtttgtgctccactcgtaagtgtgataaacaagtataatatcattctcatcttggtagc |
182 |
Q |
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| T |
19929876 |
atattagtttgtgctccactcgtaagtgtgataaacaagtataatatcattctcatcttggtagc |
19929940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 19929943 - 19929997
Alignment:
| Q |
209 |
gtttctaaattatgacatccacttgcttgactaaatggtacaacaattctgattg |
263 |
Q |
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| T |
19929943 |
gtttctaaattatgacatccacttgcttgactaaatggtacaacaattctgattg |
19929997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 19936051 - 19936145
Alignment:
| Q |
18 |
gttgtggacttgtgggaaagagtaatggatatcaaaatttgcaactgcattgactagtgttgtagaacgacaacctgcttttatttgaaaacaga |
112 |
Q |
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| T |
19936051 |
gttgtggacttgtgggaagaagtaatggatgtcaaattttccaactacatagactggtgtagtagaatgccaacgtgcttttaattgaaaacaga |
19936145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 19967190 - 19967284
Alignment:
| Q |
18 |
gttgtggacttgtgggaaagagtaatggatatcaaaatttgcaactgcattgactagtgttgtagaacgacaacctgcttttatttgaaaacaga |
112 |
Q |
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| T |
19967190 |
gttgtggacttgtgggaagaagtaatggatgtcaaattttccaactacatagactggtgtagtagaatgccaacgtgcttttaattgaaaacaga |
19967284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 47605052 - 47604958
Alignment:
| Q |
18 |
gttgtggacttgtgggaaagagtaatggatatcaaaatttgcaactgcattgactagtgttgtagaacgacaacctgcttttatttgaaaacaga |
112 |
Q |
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| T |
47605052 |
gttgtagacttgtgggaaggagtaatggatatcaaaatttgcaactacatagactaaaatagtagaactccagcatgcttttaattgaaaacaga |
47604958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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