View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8226_high_4 (Length: 679)
Name: NF8226_high_4
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8226_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 13714314 - 13714013
Alignment:
| Q |
18 |
gttatagatgctatgttgttagagttagctaaagttcatactgataataatggctataatatgatgactaaaacactaccaagagaacagtttcaaacta |
117 |
Q |
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| T |
13714314 |
gttatagatgctatgttgttagagttagctaaatttcatactgataataatggctataatatgatgactaaaacactaccaagagaaaagtttgaaacta |
13714215 |
T |
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| Q |
118 |
tcagtagtttggattgattacctccacatagttgtgagagggagatgagatatgctgggtattggggtccttctcaatgtgaagaaatgttcaagtgttt |
217 |
Q |
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| T |
13714214 |
tcactagtttggattgattacctccacatagttgtgagagggagattagatatgctgggtattggggtccttctcaatgcgaagaaatgttcaagtgttt |
13714115 |
T |
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| Q |
218 |
tagtacattatgtgtctcacctattcaagtggaaaggggtcatattggagttgttagaaaagagaattttgaagcagccactaaaagaggagctattccc |
317 |
Q |
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| T |
13714114 |
tagtacattatgtgtctcacctattcaagtggaaaggggtcatattggagttgttagaaaagagaattttgaagcagccactaaaagaggagctatttcc |
13714015 |
T |
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| Q |
318 |
at |
319 |
Q |
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|| |
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| T |
13714014 |
at |
13714013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 625 - 661
Target Start/End: Complemental strand, 13714020 - 13713984
Alignment:
| Q |
625 |
atttccatcattctttcacatcaacagtggtacttgc |
661 |
Q |
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| T |
13714020 |
atttccatcattctttcacatcaacagtggtacttgc |
13713984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 6856753 - 6856818
Alignment:
| Q |
24 |
gatgctatgttgttagagttagctaaagttcatactgataataatggctataatatgatgactaaa |
89 |
Q |
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| T |
6856753 |
gatgctaagttgttggagttatctaaagttcatattgattatagtagttatgatatgatgactaaa |
6856818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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