View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8226_high_42 (Length: 254)

Name: NF8226_high_42
Description: NF8226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8226_high_42
NF8226_high_42
[»] chr8 (1 HSPs)
chr8 (32-250)||(41294449-41294667)
[»] chr3 (2 HSPs)
chr3 (32-173)||(7755507-7755648)
chr3 (32-148)||(4086182-4086298)
[»] chr5 (2 HSPs)
chr5 (75-173)||(26153224-26153320)
chr5 (193-254)||(10049293-10049354)
[»] chr2 (3 HSPs)
chr2 (72-153)||(2210353-2210435)
chr2 (191-243)||(29712432-29712484)
chr2 (173-245)||(6766463-6766535)
[»] chr4 (2 HSPs)
chr4 (32-173)||(43470872-43471012)
chr4 (178-252)||(41463905-41463978)
[»] chr1 (2 HSPs)
chr1 (177-254)||(19038953-19039030)
chr1 (177-250)||(32153052-32153125)
[»] chr7 (2 HSPs)
chr7 (177-224)||(28904860-28904907)
chr7 (185-252)||(31542260-31542327)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 32 - 250
Target Start/End: Original strand, 41294449 - 41294667
Alignment:
Q  32 ctgagaagtgttggcagatggtagttactcctatattctttatagaaatttaatctagcttgttggattttgaaaataaaatgaatagttactattcgta 131  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41294449 ctgagaaatgttggcagatggtagttactcctatattctttatagaaatttaatctagcttgttgggttttgaaaataaaatgaatagttactattcgta 41294548  T
Q  132 taaattcgtgcaagactgtgtctcgtaacatcaatcattttcttagaaattatgagatataataaatttaatggtgtagattcccacactgcagaaaact 231  Q
    |||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41294549 taaattcgtgcaagactgtgtctcgtaacatcaagcattttcctaaaaattatgagatataataaatttaatggtgtagattcccacactgcagaaaact 41294648  T
Q  232 ggagagaaacacaccggag 250  Q
     ||||||||||||||||||    
T  41294649 tgagagaaacacaccggag 41294667  T

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Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 7755648 - 7755507
Alignment:
Q  32 ctgagaagtgttggcagatggtagttactcctatattctttatagaaatttaatctagcttgttggattttgaaaataaaatgaatagttactattcgta 131  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  7755648 ctgagaagtgttggcagatggtagttactcctatatactttatagaaatttaatctagcttgttgggttttaaaaataaaatgaatagttactattcgta 7755549  T
Q  132 taaattcgtgcaagactgtgtctcgtaacatcaatcattttc 173  Q
    ||||||||| ||| || |||||||||||||| || |||||||    
T  7755548 taaattcgtacaataccgtgtctcgtaacattaagcattttc 7755507  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 148
Target Start/End: Complemental strand, 4086298 - 4086182
Alignment:
Q  32 ctgagaagtgttggcagatggtagttactcctatattctttatagaaatttaatctagcttgttggattttgaaaataaaatgaatagttactattcgta 131  Q
    |||||||||||||||||||||| |||||| || ||| || |||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||     
T  4086298 ctgagaagtgttggcagatggtggttactgctgtatactctatagaaatttaatctagcttgttgggttttgaaaataaaatgaataattaccattcgtc 4086199  T
Q  132 taaattcgtgcaagact 148  Q
    ||||||  |||||||||    
T  4086198 taaatttatgcaagact 4086182  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 26153320 - 26153224
Alignment:
Q  75 agaaatttaatctagcttgttggattttgaaaataaaatgaatagttactattcgtataaattcgtgcaagactgtgtctcgtaacatcaatcattttc 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||  ||||||||| || |||||||    
T  26153320 agaaatttaatctagcttgttggattttgaaaataaaatgaatagttaccattcgtctaaattcgtgcaagattgtg--tcgtaacattaagcattttc 26153224  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 10049354 - 10049293
Alignment:
Q  193 ataaatttaatggtgtagattcccacactgcagaaaactggagagaaacacaccggaggaaa 254  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  10049354 ataaatttaatggtgtagattcccacactgcaaaaaacaggagaaaaacacaccggaggaaa 10049293  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 2210353 - 2210435
Alignment:
Q  72 tatagaaatttaatctagcttgttggattttgaaaataaaatgaatagtta-ctattcgtataaattcgtgcaagactgtgtc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| ||||    
T  2210353 tatagaaatttaatctagcttgttggattttgaaaataaaatgaatagttacccattcgtctaaattcgtgcaagactatgtc 2210435  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 29712484 - 29712432
Alignment:
Q  191 taataaatttaatggtgtagattcccacactgcagaaaactggagagaaacac 243  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  29712484 taataaatttaatggtgtagattcccacactacagaaaacaggagaaaaacac 29712432  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 6766535 - 6766463
Alignment:
Q  173 cttagaaattatgagatataataaatttaatggtgtagattcccacactgcagaaaactggagagaaacacac 245  Q
    |||| ||||||||||| ||||||  |||| |||||||||||  ||||| | ||||||| ||||| ||||||||    
T  6766535 cttaaaaattatgagagataatatgtttattggtgtagattttcacacagtagaaaacaggagaaaaacacac 6766463  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 43470872 - 43471012
Alignment:
Q  32 ctgagaagtgttggcagatggtagttactccta-tattctttatagaaatttaatctagcttgttggattttgaaaataaaatgaatagttactattcgt 130  Q
    |||||||||||||||||||||| |||||| ||  ||| ||||||||||||||||||||||||| ||  ||||  ||||||||| |||||| || ||||||    
T  43470872 ctgagaagtgttggcagatggtggttactacttgtatactttatagaaatttaatctagcttgctgtgttttacaaataaaataaatagtcaccattcgt 43470971  T
Q  131 ataaattcgtgcaagactgtgtctcgtaacatcaatcattttc 173  Q
     |||||| |||||||||| ||  ||||||||| || |||||||    
T  43470972 ctaaatttgtgcaagactctg--tcgtaacattaagcattttc 43471012  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 41463978 - 41463905
Alignment:
Q  178 aaattatgagatataataaatttaatggtgtagattcccacactgcagaaaactggagagaaacacaccggagga 252  Q
    |||||| |||| |||||| ||||||||||||||||| | |||||||||||||  | ||| |||||||| ||||||    
T  41463978 aaattaagagagataatatatttaatggtgtagatt-ctacactgcagaaaatcgaagaaaaacacacgggagga 41463905  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 19039030 - 19038953
Alignment:
Q  177 gaaattatgagatataataaatttaatggtgtagattcccacactgcagaaaactggagagaaacacaccggaggaaa 254  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||  |||| |||||||| ||||||||    
T  19039030 gaaattatgagagataataaatttaatgttgtagattcccacaccgcagaaaacaagagaaaaacacactggaggaaa 19038953  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 32153052 - 32153125
Alignment:
Q  177 gaaattatgagatataataaatttaatggtgtagattcccacactgcagaaaactggagagaaacacaccggag 250  Q
    ||||||| |||| ||||| ||||||||||| |||||||||||| ||| |||||  ||||| |||||||| ||||    
T  32153052 gaaattaggagagataatgaatttaatggtttagattcccacattgcggaaaataggagaaaaacacactggag 32153125  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 28904860 - 28904907
Alignment:
Q  177 gaaattatgagatataataaatttaatggtgtagattcccacactgca 224  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  28904860 gaaattaagagagataataaatttaatggtgtagattcccacactgca 28904907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 31542260 - 31542327
Alignment:
Q  185 gagatataataaatttaatggtgtagattcccacactgcagaaaactggagagaaacacaccggagga 252  Q
    |||| |||||| |||| |||||||||||| |||||||| ||||||||||||| |||||||| ||||||    
T  31542260 gagagataatacatttgatggtgtagatttccacactggagaaaactggagaaaaacacacaggagga 31542327  T

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